Network-based classification of breast cancer metastasis von Ideker, Trey, Chuang, Han-Yu, Lee, Eunjung, Liu, Yu-Tsueng, Lee, Doheon

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ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth von Zhang, Suping, Chen, Liguang, Cui, Bing, Chuang, Han-Yu, Yu, Jianqiang, Wang-Rodriguez, Jessica, Tang, Li, Chen, George, Basak, Grzegorz W, Kipps, Thomas J

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A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree von Eberle, Michael A, Fritzilas, Epameinondas, Krusche, Peter, Källberg, Morten, Moore, Benjamin L, Bekritsky, Mitchell A, Iqbal, Zamin, Chuang, Han-Yu, Humphray, Sean J, Halpern, Aaron L, Kruglyak, Semyon, Margulies, Elliott H, McVean, Gil, Bentley, David R

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Inferring pathway activity toward precise disease classification von Lee, Eunjung, Chuang, Han-Yu, Kim, Jong-Won, Ideker, Trey, Lee, Doheon

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Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms von Raczy, Come, Petrovski, Roman, Saunders, Christopher T, Chorny, Ilya, Kruglyak, Semyon, Margulies, Elliott H, Chuang, Han-Yu, Källberg, Morten, Kumar, Swathi A, Liao, Arnold, Little, Kristina M, Strömberg, Michael P, Tanner, Stephen W

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A decade of systems biology von Chuang, Han-Yu, Hofree, Matan, Ideker, Trey

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Development and Validation of an Ultradeep Next-Generation Sequencing Assay for Testing of Plasma Cell-Free DNA from Patients with Advanced Cancer von Janku, Filip, Zhang, Shile, Waters, Jill, Liu, Li, Huang, Helen J, Subbiah, Vivek, Hong, David S, Karp, Daniel D, Fu, Siqing, Cai, Xuyu, Ramzanali, Nishma M, Madwani, Kiran, Cabrilo, Goran, Andrews, Debra L, Zhao, Yue, Javle, Milind, Kopetz, E Scott, Luthra, Rajyalakshmi, Kim, Hyunsung J, Gnerre, Sante, Satya, Ravi Vijaya, Chuang, Han-Yu, Kruglyak, Kristina M, Toung, Jonathan, Zhao, Chen, Shen, Richard, Heymach, John V, Meric-Bernstam, Funda, Mills, Gordon B, Fan, Jian-Bing, Salathia, Neeraj S

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The effects of threshold inspiratory muscle training in patients with chronic obstructive pulmonary disease: A randomised experimental study von Chuang, Han‐Yu, Chang, Hsiao‐Yun, Fang, Yueh‐Yen, Guo, Su‐Er

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The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes von Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crécy-Lagard, Valérie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika

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Whole-genome haplotyping by dilution, amplification, and sequencing von Kaper, Fiona, Swamy, Sajani, Klotzle, Brandy, Munchel, Sarah, Cottrell, Joseph, Bibikova, Marina, Chuang, Han-Yu, Kruglyak, Semyon, Ronaghi, Mostafa, Eberle, Michael A., Fan, Jian-Bing

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Activation of Hepatic Inflammatory Pathways by Catecholamines Is Associated With Hepatic Insulin Resistance in Male Ischemic Stroke Rats von Wang, Ya-Yu, Lin, Shih-Yi, Chuang, Yu-Han, Sheu, Wayne Huey-Herng, Tung, Kwong-Chung, Chen, Chun-Jung

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Genomic analysis across 53 canine cancer types reveals novel mutations and high clinical actionability potential von Sakthikumar, Sharadha, Warrier, Manisha, Whitley, Derick, Facista, Salvatore, Adkins, Jonathan, Aman, Sara, Tsinajinnie, Darwin, Duran, Natalie, Siravegna, Giulia, Ahmed, Zeeshan, Day, Kenneth, Jenkins, Brooklyn, Patel, Nidhi, Ryden, Kirk, Nadai, Joe, Banovich, Kathryn, Powers, Barbara, Edwards, Jeffrey, Steinberg, Jennifer, Fielder, Susan, Wong, Shukmei, Byron, Sara A., Izatt, Tyler, Zismann, Victoria, Boateng, Martin, Zhu, Zhanyang, Chuang, Han‐Yu, Trent, Jeffrey M., Haworth, David, Chon, Esther, Hendricks, William, Wang, Guannan

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Skeletal muscle proteolysis is associated with sympathetic activation and TNF-α-ubiquitin-proteasome pathway in liver cirrhotic rats von Lin, Shih-Yi, Wang, Ya-Yu, Chuang, Yu-Han, Chen, Chun-Jung

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Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species von Lee, KiYoung, Chuang, Han-Yu, Beyer, Andreas, Sung, Min-Kyung, Huh, Won-Ki, Lee, Bonghee, Ideker, Trey

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33 Blood-based tumor mutation burden (bTMB) predicts response to immune checkpoint blockade-based combination therapy (ICBC) in advanced non-small cell lung cancer (NSCLC): a real-... von Gordon, Sean, Pellini, Bruna, Barnett, Reagan, Liao, Jiemin, Quinn, Katie, Wienke, Sara, Drusbosky, Leylah, Zhang, Nicole, Lefterova, Martina, Lawrence, Lauren, Kiedrowski, Lesli, Eppler, Ross, Odegaard, Justin, Chuang, Han-Yu

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Protective effect of docosahexaenoic acid against brain injury in ischemic rats von Pan, Hung-Chuan, Kao, Tsung-Kuei, Ou, Yen-Chuan, Yang, Dar-Yu, Yen, Yu-Ju, Wang, Chun-Chiang, Chuang, Yu-Han, Liao, Su-Lan, Raung, Shue-Ling, Wu, Ching-Wen, Chiang, An-Na, Chen, Chun-Jung

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Beneficial effect of docosahexaenoic acid on cholestatic liver injury in rats von Chen, Wen-Ying, Lin, Shih-Yi, Pan, Hung-Chuan, Liao, Su-Lan, Chuang, Yu-Han, Yen, Yu-Ju, Lin, Szu-Yin, Chen, Chun-Jung

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B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia von Zhang, Weizhou, Kater, Arnon P., Widhopf, George F., Chuang, Han-Yu, Enzler, Thomas, James, Danelle F., Poustovoitov, Maxim, Tseng, Ping-Hui, Janz, Siegfried, Hoh, Carl, Herschman, Harvey, Karin, Michael, Kipps, Thomas J.

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Stearic acid attenuates cholestasis-induced liver injury von Pan, Pin-Ho, Lin, Shih-Yi, Ou, Yen-Chuan, Chen, Wen-Ying, Chuang, Yu-Han, Yen, Yu-Ju, Liao, Su-Lan, Raung, Shue-Ling, Chen, Chun-Jung

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Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data von Dunn, Tamsen, Berry, Gwenn, Emig-Agius, Dorothea, Jiang, Yu, Lei, Serena, Iyer, Anita, Udar, Nitin, Chuang, Han-Yu, Hegarty, Jeff, Dickover, Michael, Klotzle, Brandy, Robbins, Justin, Bibikova, Marina, Peeters, Marc, Strömberg, Michael

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