DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput von Demichev, Vadim, Messner, Christoph B., Vernardis, Spyros I., Lilley, Kathryn S., Ralser, Markus

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Mass spectrometry‐based high‐throughput proteomics and its role in biomedical studies and systems biology von Messner, Christoph B., Demichev, Vadim, Wang, Ziyue, Hartl, Johannes, Kustatscher, Georg, Mülleder, Michael, Ralser, Markus

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Cellular control of protein levels: A systems biology perspective von Munro, Victoria, Kelly, Van, Messner, Christoph B., Kustatscher, Georg

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Ultra-High-Throughput Clinical Proteomics Reveals Classifiers of COVID-19 Infection von Messner, Christoph B., Demichev, Vadim, Wendisch, Daniel, Michalick, Laura, White, Matthew, Freiwald, Anja, Textoris-Taube, Kathrin, Vernardis, Spyros I., Egger, Anna-Sophia, Kreidl, Marco, Ludwig, Daniela, Kilian, Christiane, Agostini, Federica, Zelezniak, Aleksej, Thibeault, Charlotte, Pfeiffer, Moritz, Hippenstiel, Stefan, Hocke, Andreas, von Kalle, Christof, Campbell, Archie, Hayward, Caroline, Porteous, David J., Marioni, Riccardo E., Langenberg, Claudia, Lilley, Kathryn S., Kuebler, Wolfgang M., Mülleder, Michael, Drosten, Christian, Suttorp, Norbert, Witzenrath, Martin, Kurth, Florian, Sander, Leif Erik, Ralser, Markus

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The proteomic landscape of genome-wide genetic perturbations von Messner, Christoph B., Demichev, Vadim, Muenzner, Julia, Aulakh, Simran K., Barthel, Natalie, Röhl, Annika, Herrera-Domínguez, Lucía, Egger, Anna-Sophia, Kamrad, Stephan, Hou, Jing, Tan, Guihong, Lemke, Oliver, Calvani, Enrica, Szyrwiel, Lukasz, Mülleder, Michael, Lilley, Kathryn S., Boone, Charles, Kustatscher, Georg, Ralser, Markus

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Ultra-fast proteomics with Scanning SWATH von Messner, Christoph B., Demichev, Vadim, Bloomfield, Nic, Yu, Jason S. L., White, Matthew, Kreidl, Marco, Egger, Anna-Sophia, Freiwald, Anja, Ivosev, Gordana, Wasim, Fras, Zelezniak, Aleksej, Jürgens, Linda, Suttorp, Norbert, Sander, Leif Erik, Kurth, Florian, Lilley, Kathryn S., Mülleder, Michael, Tate, Stephen, Ralser, Markus

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Cysteine and iron accelerate the formation of ribose-5-phosphate, providing insights into the evolutionary origins of the metabolic network structure von Piedrafita, Gabriel, Varma, Sreejith J., Castro, Cecilia, Messner, Christoph, Szyrwiel, Lukasz, Griffin, Julian L., Ralser, Markus

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Inorganic sulfur fixation via a new homocysteine synthase allows yeast cells to cooperatively compensate for methionine auxotrophy von Yu, Jason S L, Heineike, Benjamin M, Hartl, Johannes, Aulakh, Simran K, Correia-Melo, Clara, Lehmann, Andrea, Lemke, Oliver, Agostini, Federica, Lee, Cory T, Demichev, Vadim, Messner, Christoph B, Mülleder, Michael, Ralser, Markus

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Persistent complement dysregulation with signs of thromboinflammation in active Long Covid von Cervia-Hasler, Carlo, Brüningk, Sarah C, Hoch, Tobias, Fan, Bowen, Muzio, Giulia, Thompson, Ryan C, Ceglarek, Laura, Meledin, Roman, Westermann, Patrick, Emmenegger, Marc, Taeschler, Patrick, Zurbuchen, Yves, Pons, Michele, Menges, Dominik, Ballouz, Tala, Cervia-Hasler, Sara, Adamo, Sarah, Merad, Miriam, Charney, Alexander W, Puhan, Milo, Brodin, Petter, Nilsson, Jakob, Aguzzi, Adriano, Raeber, Miro E, Messner, Christoph B, Beckmann, Noam D, Borgwardt, Karsten, Boyman, Onur

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Nonenzymatic gluconeogenesis-like formation of fructose 1,6-bisphosphate in ice von Messner, Christoph B., Driscoll, Paul C., Piedrafita, Gabriel, De Volder, Michael F. L., Ralser, Markus

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Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts von Zelezniak, Aleksej, Vowinckel, Jakob, Capuano, Floriana, Messner, Christoph B., Demichev, Vadim, Polowsky, Nicole, Mülleder, Michael, Kamrad, Stephan, Klaus, Bernd, Keller, Markus A., Ralser, Markus

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Natural proteome diversity links aneuploidy tolerance to protein turnover von Muenzner, Julia, Trébulle, Pauline, Agostini, Federica, Zauber, Henrik, Messner, Christoph B., Steger, Martin, Kilian, Christiane, Lau, Kate, Barthel, Natalie, Lehmann, Andrea, Textoris-Taube, Kathrin, Caudal, Elodie, Egger, Anna-Sophia, Amari, Fatma, De Chiara, Matteo, Demichev, Vadim, Gossmann, Toni I., Mülleder, Michael, Liti, Gianni, Schacherer, Joseph, Selbach, Matthias, Berman, Judith, Ralser, Markus

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A time-resolved proteomic and prognostic map of COVID-19 von Demichev, Vadim, Tober-Lau, Pinkus, Lemke, Oliver, Thibeault, Charlotte, Freiwald, Anja, Szyrwiel, Lukasz, Ludwig, Daniela, Correia-Melo, Clara, Aulakh, Simran Kaur, Helbig, Elisa T., Stubbemann, Paula, Lippert, Lena J., Grüning, Nana-Maria, Vernardis, Spyros, White, Matthew, Messner, Christoph B., Joannidis, Michael, Sonnweber, Thomas, Klein, Sebastian J., Pizzini, Alex, Wohlfarter, Yvonne, Sahanic, Sabina, Hilbe, Richard, Schaefer, Benedikt, Wagner, Sonja, Mittermaier, Mirja, Garcia, Carmen, Ruwwe-Glösenkamp, Christoph, Lingscheid, Tilman, Stegemann, Miriam S., Pfeiffer, Moritz, Jürgens, Linda, Denker, Sophy, Zickler, Daniel, Enghard, Philipp, Zelezniak, Aleksej, Hayward, Caroline, Porteous, David J., Marioni, Riccardo E., Uhrig, Alexander, Müller-Redetzky, Holger, Zoller, Heinz, Löffler-Ragg, Judith, Tancevski, Ivan, Witzenrath, Martin, Lilley, Kathryn, Mülleder, Michael, Sander, Leif Erik, Kleinschmidt, Malte, Heim, Katrin M., Meyer-Arndt, Lil, Hübner, Ralf H., Andermann, Tim, Doehn, Jan M., Opitz, Bastian, Sawitzki, Birgit, Schürmann, Mariana, Zoller, Thomas, Alius, Florian, Knape, Philipp, Breitbart, Astrid, Pergantis, Panagiotis, Schürmann, Dirk, Temmesfeld-Wollbrück, Bettina, Wendisch, Daniel, Brumhard, Sophia, Haenel, Sascha S., Conrad, Claudia, Georg, Philipp, Eckardt, Kai-Uwe, Lehner, Lukas, Kruse, Jan M., Ferse, Carolin, Körner, Roland, Spies, Claudia, Edel, Andreas, Weber-Carstens, Steffen, Krannich, Alexander, Li, Linna, Behrens, Uwe, Schmidt, Sein, Rönnefarth, Maria, Dang-Heine, Chantip, Röhle, Robert, Lieker, Emma, Kretzler, Lucie, Wirsching, Isabelle, Wollboldt, Christian, Wu, Yinan, Schwanitz, Georg, Hillus, David, Kasper, Stefanie, Horn, Alexandra, Briesemeister, Dana, Treue, Denise, Hummel, Michael, Corman, Victor M., Drosten, Christian, von Kalle, Christof, Kurth, Florian

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Global analysis of cytosine and adenine DNA modifications across the tree of life von Varma, Sreejith Jayasree, Calvani, Enrica, Grüning, Nana-Maria, Messner, Christoph B, Grayson, Nicholas, Capuano, Floriana, Mülleder, Michael, Ralser, Markus

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Cell-cell metabolite exchange creates a pro-survival metabolic environment that extends lifespan von Correia-Melo, Clara, Kamrad, Stephan, Tengölics, Roland, Messner, Christoph B., Trebulle, Pauline, Townsend, StJohn, Jayasree Varma, Sreejith, Freiwald, Anja, Heineike, Benjamin M., Campbell, Kate, Herrera-Dominguez, Lucía, Kaur Aulakh, Simran, Szyrwiel, Lukasz, Yu, Jason S.L., Zelezniak, Aleksej, Demichev, Vadim, Mülleder, Michael, Papp, Balázs, Alam, Mohammad Tauqeer, Ralser, Markus

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Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance von Yu, Jason S. L., Correia-Melo, Clara, Zorrilla, Francisco, Herrera-Dominguez, Lucia, Wu, Mary Y., Hartl, Johannes, Campbell, Kate, Blasche, Sonja, Kreidl, Marco, Egger, Anna-Sophia, Messner, Christoph B., Demichev, Vadim, Freiwald, Anja, Mülleder, Michael, Howell, Michael, Berman, Judith, Patil, Kiran R., Alam, Mohammad Tauqeer, Ralser, Markus

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Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics von White, Matthew E. H., Sinn, Ludwig R., Jones, D. Marc, de Folter, Joost, Aulakh, Simran Kaur, Wang, Ziyue, Flynn, Helen R., Krüger, Lynn, Tober-Lau, Pinkus, Demichev, Vadim, Kurth, Florian, Mülleder, Michael, Blanchard, Véronique, Messner, Christoph B., Ralser, Markus

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A new type of metal chelate affinity chromatography using trivalent lanthanide ions for phosphopeptide enrichment von Mirza, Munazza R, Rainer, Matthias, Messner, Christoph B, Güzel, Yüksel, Schemeth, Dieter, Stasyk, Taras, Choudhary, Muhammad I, Huber, Lukas A, Rode, Bernd M, Bonn, Günther K

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Highly selective recovery of phosphopeptides using trypsin-assisted digestion of precipitated lanthanide-phosphoprotein complexes von Güzel, Yüksel, Rainer, Matthias, Mirza, Munazza R, Messner, Christoph B, Bonn, Günther K

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Structure and dynamics of the Zr4+ ion in water von Messner, Christoph B, Hofer, Thomas S, Randolf, Bernhard R, Rode, Bernd M

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