rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison von Hahn, Lars, Leimeister, Chris-André, Ounit, Rachid, Lonardi, Stefano, Morgenstern, Burkhard

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Read-SpaM: assembly-free and alignment-free comparison of bacterial genomes with low sequencing coverage von Lau, Anna-Katharina, Dörrer, Svenja, Leimeister, Chris-André, Bleidorn, Christoph, Morgenstern, Burkhard

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Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches von Horwege, Sebastian, Lindner, Sebastian, Boden, Marcus, Hatje, Klas, Kollmar, Martin, Leimeister, Chris-André, Morgenstern, Burkhard

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Phylogeny reconstruction based on the length distribution of k -mismatch common substrings von Morgenstern, Burkhard, Schöbel, Svenja, Leimeister, Chris-André

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Fast and accurate phylogeny reconstruction using filtered spaced-word matches von Leimeister, Chris-André, Sohrabi-Jahromi, Salma, Morgenstern, Burkhard

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Benchmarking of alignment-free sequence comparison methods von Zielezinski, Andrzej, Girgis, Hani Z, Bernard, Guillaume, Leimeister, Chris-Andre, Tang, Kujin, Dencker, Thomas, Lau, Anna Katharina, Röhling, Sophie, Choi, Jae Jin, Waterman, Michael S, Comin, Matteo, Kim, Sung-Hou, Vinga, Susana, Almeida, Jonas S, Chan, Cheong Xin, James, Benjamin T, Sun, Fengzhu, Morgenstern, Burkhard, Karlowski, Wojciech M

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Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points von Leimeister, Chris-André, Dencker, Thomas, Morgenstern, Burkhard

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Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison von Leimeister, Chris-Andre, Morgenstern, Burkhard

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Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences von Leimeister, Chris-Andre, Schellhorn, Jendrik, Dörrer, Svenja, Gerth, Michael, Bleidorn, Christoph, Morgenstern, Burkhard

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Fast alignment-free sequence comparison using spaced-word frequencies von Leimeister, Chris-Andre, Boden, Marcus, Horwege, Sebastian, Lindner, Sebastian, Morgenstern, Burkhard

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Estimating evolutionary distances between genomic sequences from spaced-word matches von Morgenstern, Burkhard, Zhu, Bingyao, Horwege, Sebastian, Leimeister, Chris André

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Multi-SpaM: A Maximum-Likelihood Approach to Phylogeny Reconstruction Using Multiple Spaced-Word Matches and Quartet Trees von Dencker, Thomas, Leimeister, Chris-André, Gerth, Michael, Bleidorn, Christoph, Snir, Sagi, Morgenstern, Burkhard

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‘Multi-SpaM’: a maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees von Dencker, Thomas, Leimeister, Chris-André, Gerth, Michael, Bleidorn, Christoph, Snir, Sagi, Morgenstern, Burkhard

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Estimating Evolutionary Distances from Spaced-Word Matches von Morgenstern, Burkhard, Zhu, Binyao, Horwege, Sebastian, Leimeister, Chris-André

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RasBhari: optimizing spaced seeds for database searching, read mapping and alignment-free sequence comparison von Hahn, Lars, Chris-André Leimeister, Ounit, Rachid, Lonardi, Stefano, Morgenstern, Burkhard

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Estimating phylogenetic distances between genomic sequences based on the length distribution of k-mismatch common substrings von Morgenstern, Burkhard, Schöbel, Svenja, Leimeister, Chris-André

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Estimating evolutionary distances from spaced-word matches von Morgenstern, Burkhard, Zhu, Binyao, Horwege, Sebastian, Leimeister, Chris-Andre

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Estimating phylogenetic distances between genomic sequences based on the length distribution of k-mismatch common substrings von Morgenstern, Burkhard, Schöbel, Svenja, Chris-André Leimeister

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Anchor points for genome alignment based on Filtered Spaced Word Matches von Leimeister, Chris-Andre, Dencker, Thomas, Morgenstern, Burkhard

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Multi-SpaM: a Maximum-Likelihood approach to Phylogeny reconstruction based on Multiple Spaced-Word Matches von Dencker, Thomas, Leimeister, Chris-Andre, Gerth, Michael, Bleidorn, Christoph, Snir, Sagi, Morgenstern, Burkhard

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