Multiple feedback loops through cytokinin signaling control stem cell number within the Arabidopsis shoot meristem von Gordon, Sean P, Chickarmane, Vijay S, Ohno, Carolyn, Meyerowitz, Elliot M

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Cytokinin signaling as a positional cue for patterning the apical–basal axis of the growing Arabidopsis shoot meristem von Chickarmane, Vijay S, Gordon, Sean P, Tarr, Paul T, Heisler, Marcus G, Meyerowitz, Elliot M

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A computational model for understanding stem cell, trophectoderm and endoderm lineage determination von Chickarmane, Vijay, Peterson, Carsten

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Variability in the control of cell division underlies sepal epidermal patterning in Arabidopsis thaliana von Roeder, Adrienne H K, Chickarmane, Vijay, Cunha, Alexandre, Obara, Boguslaw, Manjunath, B S, Meyerowitz, Elliot M

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Computational modeling of the hematopoietic erythroid-myeloid switch reveals insights into cooperativity, priming, and irreversibility von Chickarmane, Vijay, Enver, Tariq, Peterson, Carsten

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Simulating the mammalian blastocyst--molecular and mechanical interactions pattern the embryo von Krupinski, Pawel, Chickarmane, Vijay, Peterson, Carsten

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Transcriptional dynamics of the embryonic stem cell switch von Chickarmane, Vijay, Troein, Carl, Nuber, Ulrike A, Sauro, Herbert M, Peterson, Carsten

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Integrated Model of Chemical Perturbations of a Biological Pathway Using 18 In Vitro High-Throughput Screening Assays for the Estrogen Receptor von Judson, Richard S, Magpantay, Felicia Maria, Chickarmane, Vijay, Haskell, Cymra, Tania, Nessy, Taylor, Jean, Xia, Menghang, Huang, Ruili, Rotroff, Daniel M, Filer, Dayne L, Houck, Keith A, Martin, Matthew T, Sipes, Nisha, Richard, Ann M, Mansouri, Kamel, Setzer, R Woodrow, Knudsen, Thomas B, Crofton, Kevin M, Thomas, Russell S

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Probing the role of stochasticity in a model of the embryonic stem cell: heterogeneous gene expression and reprogramming efficiency von Chickarmane, Vijay, Olariu, Victor, Peterson, Carsten

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Computational morphodynamics of plants: integrating development over space and time von Roeder, Adrienne H. K, Meyerowitz, Elliot M, Tarr, Paul T, Tobin, Cory, Zhang, Xiaolan, Chickarmane, Vijay, Cunha, Alexandre

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Computational multiscale modeling of embryo development von Krupinski, Pawel, Chickarmane, Vijay, Peterson, Carsten

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Computational Morphodynamics: A Modeling Framework to Understand Plant Growth von Chickarmane, Vijay, Roeder, Adrienne H.K, Tarr, Paul T, Cunha, Alexandre, Tobin, Cory, Meyerowitz, Elliot M

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Oscillatory dynamics arising from competitive inhibition and multisite phosphorylation von Chickarmane, Vijay, Kholodenko, Boris N., Sauro, Herbert M.

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Computational modelling of T-cell formation kinetics: output regulated by initial proliferation-linked deferral of developmental competence von Manesso, Erica, Chickarmane, Vijay, Kueh, Hao Yuan, Rothenberg, Ellen V., Peterson, Carsten

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A computational model for understanding stem cell, trophectoderm and endoderm lineage determination von Chickarmane, Vijay, Peterson, Carsten

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Conservation analysis of large biochemical networks von Vallabhajosyula, Ravishankar Rao, Chickarmane, Vijay, Sauro, Herbert M.

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Simulating the Mammalian Blastocyst - Molecular and Mechanical Interactions Pattern the Embryo: e1001128 von Krupinski, Pawel, Chickarmane, Vijay, Peterson, Carsten

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Bifurcation discovery tool von Chickarmane, Vijay, Paladugu, Sri R., Bergmann, Frank, Sauro, Herbert M.

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Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility: e1000268 von Chickarmane, Vijay, Enver, Tariq, Peterson, Carsten

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Variability in the Control of Cell Division Underlies Sepal Epidermal Patterning in Arabidopsis thaliana: e1000367 von Roeder, Adrienne HK, Chickarmane, Vijay, Cunha, Alexandre, Obara, Boguslaw, Manjunath, B S, Meyerowitz, Elliot M

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