Comparing phenotypic variation between inbred and outbred mice von Tuttle, Alexander H., Philip, Vivek M., Chesler, Elissa J., Mogil, Jeffrey S.

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High-resolution genetic mapping using the Mouse Diversity outbred population von Svenson, Karen L, Gatti, Daniel M, Valdar, William, Welsh, Catherine E, Cheng, Riyan, Chesler, Elissa J, Palmer, Abraham A, McMillan, Leonard, Churchill, Gary A

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Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis von Goodwin, Leslie O, Splinter, Erik, Davis, Tiffany L, Urban, Rachel, He, Hao, Braun, Robert E, Chesler, Elissa J, Kumar, Vivek, van Min, Max, Ndukum, Juliet, Philip, Vivek M, Reinholdt, Laura G, Svenson, Karen, White, Jacqueline K, Sasner, Michael, Lutz, Cathleen, Murray, Stephen A

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Reproducibility and replicability of rodent phenotyping in preclinical studies von Kafkafi, Neri, Agassi, Joseph, Chesler, Elissa J., Crabbe, John C., Crusio, Wim E., Eilam, David, Gerlai, Robert, Golani, Ilan, Gomez-Marin, Alex, Heller, Ruth, Iraqi, Fuad, Jaljuli, Iman, Karp, Natasha A., Morgan, Hugh, Nicholson, George, Pfaff, Donald W., Richter, S. Helene, Stark, Philip B., Stiedl, Oliver, Stodden, Victoria, Tarantino, Lisa M., Tucci, Valter, Valdar, William, Williams, Robert W., Würbel, Hanno, Benjamini, Yoav

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The Genetics of Neuropathic Pain from Model Organisms to Clinical Application von Calvo, Margarita, Davies, Alexander J., Hébert, Harry L., Weir, Greg A., Chesler, Elissa J., Finnerup, Nanna B., Levitt, Roy C., Smith, Blair H., Neely, G. Gregory, Costigan, Michael, Bennett, David L.

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Cisplatin-resistant triple-negative breast cancer subtypes: multiple mechanisms of resistance von Hill, David P, Harper, Akeena, Malcolm, Joan, McAndrews, Monica S, Mockus, Susan M, Patterson, Sara E, Reynolds, Timothy, Baker, Erich J, Bult, Carol J, Chesler, Elissa J, Blake, Judith A

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Collaborative Cross and Diversity Outbred data resources in the Mouse Phenome Database von Bogue, Molly A., Churchill, Gary A., Chesler, Elissa J.

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Mouse Phenome Database: towards a more FAIR-compliant and TRUST-worthy data repository and tool suite for phenotypes and genotypes von Bogue, Molly A, Ball, Robyn L, Philip, Vivek M, Walton, David O, Dunn, Matthew H, Kolishovski, Georgi, Lamoureux, Anna, Gerring, Matthew, Liang, Hongping, Emerson, Jake, Stearns, Tim, He, Hao, Mukherjee, Gaurab, Bluis, John, Desai, Sejal, Sundberg, Beth, Kadakkuzha, Beena, Kunde-Ramamoorthy, Govindarajan, Chesler, Elissa J

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A multi-lab experimental assessment reveals that replicability can be improved by using empirical estimates of genotype-by-lab interaction von Jaljuli, Iman, Kafkafi, Neri, Giladi, Eliezer, Golani, Ilan, Gozes, Illana, Chesler, Elissa J, Bogue, Molly A, Benjamini, Yoav

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Host genetic and environmental effects on mouse intestinal microbiota von Campbell, James H, Foster, Carmen M, Vishnivetskaya, Tatiana, Campbell, Alisha G, Yang, Zamin K, Wymore, Ann, Palumbo, Anthony V, Chesler, Elissa J, Podar, Mircea

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Mechanistic Differences in Neuropathic Pain Modalities Revealed by Correlating Behavior with Global Expression Profiling von Cobos, Enrique J., Nickerson, Chelsea A., Gao, Fuying, Chandran, Vijayendran, Bravo-Caparrós, Inmaculada, González-Cano, Rafael, Riva, Priscilla, Andrews, Nick A., Latremoliere, Alban, Seehus, Corey R., Perazzoli, Gloria, Nieto, Francisco R., Joller, Nicole, Painter, Michio W., Ma, Chi Him Eddie, Omura, Takao, Chesler, Elissa J., Geschwind, Daniel H., Coppola, Giovanni, Rangachari, Manu, Woolf, Clifford J., Costigan, Michael

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Enhlink infers distal and context-specific enhancer-promoter linkages von Poirion, Olivier B, Zuo, Wulin, Spruce, Catrina, Baker, Candice N, Daigle, Sandra L, Olson, Ashley, Skelly, Daniel A, Chesler, Elissa J, Baker, Christopher L, White, Brian S

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Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice von Bogue, Molly A, Grubb, Stephen C, Walton, David O, Philip, Vivek M, Kolishovski, Georgi, Stearns, Tim, Dunn, Matthew H, Skelly, Daniel A, Kadakkuzha, Beena, TeHennepe, Gregg, Kunde-Ramamoorthy, Govindarajan, Chesler, Elissa J

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Genetic analysis of complex traits in the emerging Collaborative Cross von Aylor, David L, Valdar, William, Foulds-Mathes, Wendy, Buus, Ryan J, Verdugo, Ricardo A, Baric, Ralph S, Ferris, Martin T, Frelinger, Jeff A, Heise, Mark, Frieman, Matt B, Gralinski, Lisa E, Bell, Timothy A, Didion, John D, Hua, Kunjie, Nehrenberg, Derrick L, Powell, Christine L, Steigerwalt, Jill, Xie, Yuying, Kelada, Samir N P, Collins, Francis S, Yang, Ivana V, Schwartz, David A, Branstetter, Lisa A, Chesler, Elissa J, Miller, Darla R, Spence, Jason, Liu, Eric Yi, McMillan, Leonard, Sarkar, Abhishek, Wang, Jeremy, Wang, Wei, Zhang, Qi, Broman, Karl W, Korstanje, Ron, Durrant, Caroline, Mott, Richard, Iraqi, Fuad A, Pomp, Daniel, Threadgill, David, de Villena, Fernando Pardo-Manuel, Churchill, Gary A

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Genetic variation regulates opioid-induced respiratory depression in mice von Bubier, Jason A., He, Hao, Philip, Vivek M., Roy, Tyler, Hernandez, Christian Monroy, Bernat, Rebecca, Donohue, Kevin D., O’Hara, Bruce F., Chesler, Elissa J.

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The microbial community dynamics of cocaine sensitization in two behaviorally divergent strains of collaborative cross mice von Tran, Thi Dong Binh, Monroy Hernandez, Christian, Nguyen, Hoan, Wright, Susan, Tarantino, Lisa M., Chesler, Elissa J., Weinstock, George M., Zhou, Yanjiao, Bubier, Jason A.

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The collaborative cross strains and their founders vary widely in cocaine-induced behavioral sensitization von Schoenrock, Sarah A., Gagnon, Leona, Olson, Ashley, Leonardo, Michael, Philip, Vivek M., He, Hao, Reinholdt, Laura G., Sukoff Rizzo, Stacey J., Jentsch, James D., Chesler, Elissa J., Tarantino, Lisa M.

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The Ontology of Biological Attributes (OBA)—computational traits for the life sciences von Stefancsik, Ray, Balhoff, James P., Balk, Meghan A., Ball, Robyn L., Bello, Susan M., Caron, Anita R., Chesler, Elissa J., de Souza, Vinicius, Gehrke, Sarah, Haendel, Melissa, Harris, Laura W., Harris, Nomi L., Ibrahim, Arwa, Koehler, Sebastian, Matentzoglu, Nicolas, McMurry, Julie A., Mungall, Christopher J., Munoz-Torres, Monica C., Putman, Tim, Robinson, Peter, Smedley, Damian, Sollis, Elliot, Thessen, Anne E., Vasilevsky, Nicole, Walton, David O., Osumi-Sutherland, David

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Quantitative Trait Locus Mapping Methods for Diversity Outbred Mice von Gatti, Daniel M, Svenson, Karen L, Shabalin, Andrey, Wu, Long-Yang, Valdar, William, Simecek, Petr, Goodwin, Neal, Cheng, Riyan, Pomp, Daniel, Palmer, Abraham, Chesler, Elissa J, Broman, Karl W, Churchill, Gary A

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High-resolution sex-specific linkage maps of the mouse reveal polarized distribution of crossovers in male germline von Liu, Eric Yi, Morgan, Andrew P, Chesler, Elissa J, Wang, Wei, Churchill, Gary A, Pardo-Manuel de Villena, Fernando

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