Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal von Cohen, Keira A, Abeel, Thomas, Manson McGuire, Abigail, Desjardins, Christopher A, Munsamy, Vanisha, Shea, Terrance P, Walker, Bruce J, Bantubani, Nonkqubela, Almeida, Deepak V, Alvarado, Lucia, Chapman, Sinéad B, Mvelase, Nomonde R, Duffy, Eamon Y, Fitzgerald, Michael G, Govender, Pamla, Gujja, Sharvari, Hamilton, Susanna, Howarth, Clinton, Larimer, Jeffrey D, Maharaj, Kashmeel, Pearson, Matthew D, Priest, Margaret E, Zeng, Qiandong, Padayatchi, Nesri, Grosset, Jacques, Young, Sarah K, Wortman, Jennifer, Mlisana, Koleka P, O'Donnell, Max R, Birren, Bruce W, Bishai, William R, Pym, Alexander S, Earl, Ashlee M

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The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum von Neafsey, Daniel E, Galinsky, Kevin, Jiang, Rays H Y, Young, Lauren, Sykes, Sean M, Saif, Sakina, Gujja, Sharvari, Goldberg, Jonathan M, Young, Sarah, Zeng, Qiandong, Chapman, Sinéad B, Dash, Aditya P, Anvikar, Anupkumar R, Sutton, Patrick L, Birren, Bruce W, Escalante, Ananias A, Barnwell, John W, Carlton, Jane M

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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak von Gire, Stephen K., Goba, Augustine, Andersen, Kristian G., Sealfon, Rachel S. G., Park, Daniel J., Kanneh, Lansana, Jalloh, Simbirie, Momoh, Mambu, Fullah, Mohamed, Dudas, Gytis, Wohl, Shirlee, Moses, Lina M., Yozwiak, Nathan L., Winnicki, Sarah, Matranga, Christian B., Malboeuf, Christine M., Qu, James, Gladden, Adrianne D., Schaffner, Stephen F., Yang, Xiao, Jiang, Pan-Pan, Nekoui, Mahan, Colubri, Andres, Coomber, Moinya Ruth, Fonnie, Mbalu, Moigboi, Alex, Gbakie, Michael, Kamara, Fatima K., Tucker, Veronica, Konuwa, Edwin, Saffa, Sidiki, Sellu, Josephine, Jalloh, Abdul Azziz, Kovoma, Alice, Koninga, James, Mustapha, Ibrahim, Kargbo, Kandeh, Foday, Momoh, Yillah, Mohamed, Kanneh, Franklyn, Robert, Willie, Massally, James L. B., Chapman, Sinéad B., Bochicchio, James, Murphy, Cheryl, Nusbaum, Chad, Young, Sarah, Birren, Bruce W., Grant, Donald S., Scheiffelin, John S., Lander, Eric S., Happi, Christian, Gevao, Sahr M., Gnirke, Andreas, Rambaut, Andrew, Garry, Robert F., Khan, S. Humarr, Sabeti, Pardis C.

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Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events von Lemieux, Jacob E., Siddle, Katherine J., Shaw, Bennett M., Loreth, Christine, Schaffner, Stephen F., Gladden-Young, Adrianne, Adams, Gordon, Fink, Timelia, Tomkins-Tinch, Christopher H., Krasilnikova, Lydia A., DeRuff, Katherine C., Rudy, Melissa, Bauer, Matthew R., Lagerborg, Kim A., Normandin, Erica, Chapman, Sinead B., Reilly, Steven K., Anahtar, Melis N., Lin, Aaron E., Carter, Amber, Myhrvold, Cameron, Kemball, Molly E., Chaluvadi, Sushma, Cusick, Caroline, Flowers, Katelyn, Neumann, Anna, Cerrato, Felecia, Farhat, Maha, Slater, Damien, Harris, Jason B., Branda, John A., Hooper, David, Gaeta, Jessie M., Baggett, Travis P., O'Connell, James, Gnirke, Andreas, Lieberman, Tami D., Philippakis, Anthony, Burns, Meagan, Brown, Catherine M., Luban, Jeremy, Ryan, Edward T., Turbett, Sarah E., LaRocque, Regina C., Hanage, William P., Gallagher, Glen R., Madoff, Lawrence C., Smole, Sandra, Pierce, Virginia M., Rosenberg, Eric, Sabeti, Pardis C., Park, Daniel J., MacInnis, Bronwyn L.

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Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks von Cerqueira, Gustavo C., Earl, Ashlee M., Ernst, Christoph M., Grad, Yonatan H., Dekker, John P., Feldgarden, Michael, Chapman, Sinéad B., Reis-Cunha, João L., Shea, Terrance P., Young, Sarah, Zeng, Qiandong, Delaney, Mary L., Kim, Diane, Peterson, Ellena M., O’Brien, Thomas F., Ferraro, Mary Jane, Hooper, David C., Huang, Susan S., Kirby, James E., Onderdonk, Andrew B., Birren, Bruce W., Hung, Deborah T., Cosimi, Lisa A., Wortman, Jennifer R., Murphy, Cheryl I., Hanage, William P.

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Exome sequencing in bipolar disorder identifies AKAP11 as a risk gene shared with schizophrenia von Palmer, Duncan S., Howrigan, Daniel P., Chapman, Sinéad B., Adolfsson, Rolf, Bass, Nick, Blackwood, Douglas, Boks, Marco P. M., Chen, Chia-Yen, Churchhouse, Claire, Corvin, Aiden P., Craddock, Nicholas, Curtis, David, Di Florio, Arianna, Dickerson, Faith, Freimer, Nelson B., Goes, Fernando S., Jia, Xiaoming, Jones, Ian, Jones, Lisa, Jonsson, Lina, Kahn, Rene S., Landén, Mikael, Locke, Adam E., McIntosh, Andrew M., McQuillin, Andrew, Morris, Derek W., O’Donovan, Michael C., Ophoff, Roel A., Owen, Michael J., Pedersen, Nancy L., Posthuma, Danielle, Reif, Andreas, Risch, Neil, Schaefer, Catherine, Scott, Laura, Singh, Tarjinder, Smoller, Jordan W., Solomonson, Matthew, Clair, David St, Stahl, Eli A., Vreeker, Annabel, Walters, James T. R., Wang, Weiqing, Watts, Nicholas A., Yolken, Robert, Zandi, Peter P., Neale, Benjamin M.

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Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance von Manson, Abigail L, Cohen, Keira A, Abeel, Thomas, Desjardins, Christopher A, Armstrong, Derek T, Barry, Clifton E, Brand, Jeannette, Chapman, Sinéad B, Cho, Sang-Nae, Gabrielian, Andrei, Gomez, James, Jodals, Andreea M, Joloba, Moses, Jureen, Pontus, Lee, Jong Seok, Malinga, Lesibana, Maiga, Mamoudou, Nordenberg, Dale, Noroc, Ecaterina, Romancenco, Elena, Salazar, Alex, Ssengooba, Willy, Velayati, A A, Winglee, Kathryn, Zalutskaya, Aksana, Via, Laura E, Cassell, Gail H, Dorman, Susan E, Ellner, Jerrold, Farnia, Parissa, Galagan, James E, Rosenthal, Alex, Crudu, Valeriu, Homorodean, Daniela, Hsueh, Po-Ren, Narayanan, Sujatha, Pym, Alexander S, Skrahina, Alena, Swaminathan, Soumya, Van der Walt, Martie, Alland, David, Bishai, William R, Cohen, Ted, Hoffner, Sven, Birren, Bruce W, Earl, Ashlee M

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Extensive global movement of multidrug-resistant M. tuberculosis strains revealed by whole-genome analysis von Cohen, Keira A, Manson, Abigail L, Abeel, Thomas, Desjardins, Christopher A, Chapman, Sinead B, Hoffner, Sven, Birren, Bruce W, Earl, Ashlee M

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Sequencing of Culex quinquefasciatus Establishes a Platform for Mosquito Comparative Genomics von Arensburger, Peter, Megy, Karine, Waterhouse, Robert M, Abrudan, Jenica, Amedeo, Paolo, Antelo, Beatriz, Bartholomay, Lyric, Bidwell, Shelby, Caler, Elisabet, Camara, Francisco, Campbell, Corey L, Campbell, Kathryn S, Casola, Claudio, Castro, Marta T, Chandramouliswaran, Ishwar, Chapman, Sinéad B, Christley, Scott, Costas, Javier, Eisenstadt, Eric, Feschotte, Cedric, Fraser-Liggett, Claire, Guigo, Roderic, Haas, Brian, Hammond, Martin, Hansson, Bill S, Hemingway, Janet, Hill, Sharon R, Howarth, Clint, Ignell, Rickard, Kennedy, Ryan C, Kodira, Chinnappa D, Lobo, Neil F, Mao, Chunhong, Mayhew, George, Michel, Kristin, Mori, Akio, Liu, Nannan, Naveira, Horacio, Nene, Vishvanath, Nguyen, Nam, Pearson, Matthew D, Pritham, Ellen J, Puiu, Daniela, Qi, Yumin, Ranson, Hilary, Ribeiro, Jose M.C, Roberston, Hugh M, Severson, David W, Shumway, Martin, Stanke, Mario, Strausberg, Robert L, Sun, Cheng, Sutton, Granger, Tu, Zhijian (Jake), Tubio, Jose Manuel C, Unger, Maria F, Vanlandingham, Dana L, Vilella, Albert J, White, Owen, White, Jared R, Wondji, Charles S, Wortman, Jennifer, Zdobnov, Evgeny M, Birren, Bruce, Christensen, Bruce M, Collins, Frank H, Cornel, Anthony, Dimopoulos, George, Hannick, Linda I, Higgs, Stephen, Lanzaro, Gregory C, Lawson, Daniel, Lee, Norman H, Muskavitch, Marc A.T, Raikhel, Alexander S, Atkinson, Peter W

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Increasing diversity in genomics requires investment in equitable partnerships and capacity building von Martin, Alicia R., Stroud, Rocky E., Abebe, Tamrat, Akena, Dickens, Alemayehu, Melkam, Atwoli, Lukoye, Chapman, Sinéad B., Flowers, Katelyn, Gelaye, Bizu, Gichuru, Stella, Kariuki, Symon M., Kinyanjui, Sam, Korte, Kristina J., Koen, Nastassja, Koenen, Karestan C., Newton, Charles R. J. C., Olivares, Ana Maria, Pollock, Sam, Post, Kristianna, Singh, Ilina, Stein, Dan J., Teferra, Solomon, Zingela, Zukiswa, Chibnik, Lori B.

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Low-coverage sequencing cost-effectively detects known and novel variation in underrepresented populations von Martin, Alicia R., Atkinson, Elizabeth G., Chapman, Sinéad B., Stevenson, Anne, Stroud, Rocky E., Abebe, Tamrat, Akena, Dickens, Alemayehu, Melkam, Ashaba, Fred K., Atwoli, Lukoye, Bowers, Tera, Chibnik, Lori B., Daly, Mark J., DeSmet, Timothy, Dodge, Sheila, Fekadu, Abebaw, Ferriera, Steven, Gelaye, Bizu, Gichuru, Stella, Injera, Wilfred E., James, Roxanne, Kariuki, Symon M., Kigen, Gabriel, Koenen, Karestan C., Kwobah, Edith, Kyebuzibwa, Joseph, Majara, Lerato, Musinguzi, Henry, Mwema, Rehema M., Neale, Benjamin M., Newman, Carter P., Newton, Charles R.J.C., Pickrell, Joseph K., Ramesar, Raj, Shiferaw, Welelta, Stein, Dan J., Teferra, Solomon, van der Merwe, Celia, Zingela, Zukiswa

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Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere von Challagundla, Lavanya, Reyes, Jinnethe, Rafiqullah, Iftekhar, Sordelli, Daniel O, Echaniz-Aviles, Gabriela, Velazquez-Meza, Maria E, Castillo-Ramírez, Santiago, Fittipaldi, Nahuel, Feldgarden, Michael, Chapman, Sinéad B, Calderwood, Michael S, Carvajal, Lina P, Rincon, Sandra, Hanson, Blake, Planet, Paul J, Arias, Cesar A, Diaz, Lorena, Robinson, D Ashley

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Whole-Genome Sequencing of Mycobacterium tuberculosis Provides Insight into the Evolution and Genetic Composition of Drug-Resistant Tuberculosis in Belarus von Wollenberg, Kurt R, Desjardins, Christopher A, Zalutskaya, Aksana, Slodovnikova, Vervara, Oler, Andrew J, Quiñones, Mariam, Abeel, Thomas, Chapman, Sinead B, Tartakovsky, Michael, Gabrielian, Andrei, Hoffner, Sven, Skrahin, Aliaksandr, Birren, Bruce W, Rosenthal, Alexander, Skrahina, Alena, Earl, Ashlee M

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Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections von Straub, Timothy J., Chou, Wen-Chi, Manson, Abigail L., Schreiber, Henry L., Walker, Bruce J., Desjardins, Christopher A., Chapman, Sinead B., Kaspar, Kerrie L., Kahsai, Orsalem J., Traylor, Elizabeth, Dodson, Karen W., Hullar, Meredith A. J., Hultgren, Scott J., Khoo, Christina, Earl, Ashlee M.

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Pathogenomics of Culex quinquefasciatus and Meta-Analysis of Infection Responses to Diverse Pathogens von Bartholomay, Lyric C, Waterhouse, Robert M, Mayhew, George F, Campbell, Corey L, Michel, Kristin, Zou, Zhen, Ramirez, Jose L, Das, Suchismita, Alvarez, Kanwal, Arensburger, Peter, Bryant, Bart, Chapman, Sinead B, Dong, Yuemei, Erickson, Sara M, Karunaratne, S.H.P. Parakrama, Kokoza, Vladimir, Kodira, Chinnappa D, Pignatelli, Patricia, Shin, Sang Woon, Vanlandingham, Dana L, Atkinson, Peter W, Birren, Bruce, Christophides, George K, Clem, Rollie J, Hemingway, Janet, Higgs, Stephen, Megy, Karine, Ranson, Hilary, Zdobnov, Evgeny M, Raikhel, Alexander S, Christensen, Bruce M, Dimopoulos, George, Muskavitch, Marc A.T

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Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women von Worby, Colin J., Schreiber, Henry L., Straub, Timothy J., van Dijk, Lucas R., Bronson, Ryan A., Olson, Benjamin S., Pinkner, Jerome S., Obernuefemann, Chloe L. P., Muñoz, Vanessa L., Paharik, Alexandra E., Azimzadeh, Philippe N., Walker, Bruce J., Desjardins, Christopher A., Chou, Wen-Chi, Bergeron, Karla, Chapman, Sinéad B., Klim, Aleksandra, Manson, Abigail L., Hannan, Thomas J., Hooton, Thomas M., Kau, Andrew L., Lai, H. Henry, Dodson, Karen W., Hultgren, Scott J., Earl, Ashlee M.

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Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance von Salamzade, Rauf, Manson, Abigail L, Walker, Bruce J, Brennan-Krohn, Thea, Worby, Colin J, Ma, Peijun, He, Lorrie L, Shea, Terrance P, Qu, James, Chapman, Sinéad B, Howe, Whitney, Young, Sarah K, Wurster, Jenna I, Delaney, Mary L, Kanjilal, Sanjat, Onderdonk, Andrew B, Bittencourt, Cassiana E, Gussin, Gabrielle M, Kim, Diane, Peterson, Ellena M, Ferraro, Mary Jane, Hooper, David C, Shenoy, Erica S, Cuomo, Christina A, Cosimi, Lisa A, Huang, Susan S, Kirby, James E, Pierce, Virginia M, Bhattacharyya, Roby P, Earl, Ashlee M

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Rare coding variants in ten genes confer substantial risk for schizophrenia von Singh, Tarjinder, Poterba, Timothy, Curtis, David, Akil, Huda, Al Eissa, Mariam, Barchas, Jack D., Bass, Nicholas, Bigdeli, Tim B., Breen, Gerome, Bromet, Evelyn J., Buckley, Peter F., Bunney, William E., Bybjerg-Grauholm, Jonas, Byerley, William F., Chapman, Sinéad B., Chen, Wei J., Churchhouse, Claire, Craddock, Nicholas, DeLisi, Lynn, Dodge, Sheila, Escamilla, Michael A., Eskelinen, Saana, Fanous, Ayman H., Faraone, Stephen V., Fiorentino, Alessia, Francioli, Laurent, Gabriel, Stacey B., Gage, Diane, Gagliano Taliun, Sarah A., Ganna, Andrea, Genovese, Giulio, Grove, Jakob, Hall, Mei-Hua, Heyne, Henrike O., Holi, Matti, Hougaard, David M., Howrigan, Daniel P., Huang, Hailiang, Hwu, Hai-Gwo, Kahn, René S., Kang, Hyun Min, Karczewski, Konrad J., Knowles, James A., Lee, Francis S., Lehrer, Douglas S., Lescai, Francesco, Marder, Stephen R., McCarroll, Steven A., McIntosh, Andrew M., Milani, Lili, Morley, Christopher P., Morris, Derek W., Mortensen, Preben Bo, Nordentoft, Merete, O’Brien, Niamh L., Olivares, Ana Maria, Ongur, Dost, Ouwehand, Willem H., Palmer, Duncan S., Paunio, Tiina, Quested, Digby, Rapaport, Mark H., Rees, Elliott, Rollins, Brandi, Satterstrom, F. Kyle, Schatzberg, Alan, Scolnick, Edward, Scott, Laura J., Sharp, Sally I., Sklar, Pamela, Smoller, Jordan W., Solomonson, Matthew, Stahl, Eli A., Stevens, Christine R., Suvisaari, Jaana, Watts, Nicholas A., Blackwood, Douglas H., Cohen, Bruce M., Corvin, Aiden P., Esko, Tõnu, Freimer, Nelson B., Glatt, Stephen J., Hultman, Christina M., McQuillin, Andrew, Palotie, Aarno, Pato, Carlos N., Pato, Michele T., Pulver, Ann E., St. Clair, David, Tsuang, Ming T., Vawter, Marquis P., Walters, James T., Werge, Thomas M., Ophoff, Roel A., Sullivan, Patrick F., Owen, Michael J., Boehnke, Michael, O’Donovan, Michael C., Neale, Benjamin M., Daly, Mark J.

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Contributions of common genetic variants to risk of schizophrenia among individuals of African and Latino ancestry von Bigdeli, Tim B., Genovese, Giulio, Georgakopoulos, Penelope, Meyers, Jacquelyn L., Peterson, Roseann E., Iyegbe, Conrad O., Medeiros, Helena, Valderrama, Jorge, Achtyes, Eric D., Kotov, Roman, Stahl, Eli A., Abbott, Colony, Azevedo, Maria Helena, Belliveau, Richard A., Bevilacqua, Elizabeth, Bromet, Evelyn J., Byerley, William, Carvalho, Celia Barreto, Chapman, Sinéad B., DeLisi, Lynn E., Dumont, Ashley L., O’Dushlaine, Colm, Evgrafov, Oleg V., Fochtmann, Laura J., Gage, Diane, Kennedy, James L., Kinkead, Becky, Macedo, Antonio, Moran, Jennifer L., Morley, Christopher P., Dewan, Mantosh J., Nemesh, James, Perkins, Diana O., Purcell, Shaun M., Rakofsky, Jeffrey J., Scolnick, Edward M., Sklar, Brooke M., Sklar, Pamela, Smoller, Jordan W., Sullivan, Patrick F., Macciardi, Fabio, Marder, Stephen R., Gur, Ruben C., Gur, Raquel E., Braff, David L., Nicolini, Humberto, Escamilla, Michael A., Vawter, Marquis P., Sobell, Janet L., Malaspina, Dolores, Lehrer, Douglas S., Buckley, Peter F., Rapaport, Mark H., Knowles, James A., Fanous, Ayman H., Pato, Michele T., McCarroll, Steven A., Pato, Carlos N.

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Draft Genome Sequences of Two Extensively Drug-Resistant Strains of Mycobacterium tuberculosis Belonging to the Euro-American S Lineage von Malinga, Lesibana A, Abeel, Thomas, Desjardins, Christopher A, Dlamini, Talent C, Cassell, Gail, Chapman, Sinéad B, Birren, Bruce W, Earl, Ashlee M, van der Walt, Martie

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