Three generation families: Analysis of de novo variants in autism von Costa, Claudia I Samogy, da Silva Campos, Gabriele, da Silva Montenegro, Eduarda Morgana, Wang, Jaqueline Yu Ting, Scliar, Marília, Monfardini, Frederico, Zachi, Elaine Cristina, Lourenço, Naila C V, Chan, Ada J S, Pereira, Sergio L, Engchuan, Worrawat, Thiruvahindrapuram, Bhooma, Zarrei, Mehdi, Scherer, Stephen W, Passos-Bueno, Maria Rita

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SCIP: software for efficient clinical interpretation of copy number variants detected by whole-genome sequencing von Ding, Qiliang, Somerville, Cherith, Manshaei, Roozbeh, Trost, Brett, Reuter, Miriam S., Kalbfleisch, Kelsey, Stanley, Kaitlin, Okello, John B. A., Hosseini, S. Mohsen, Liston, Eriskay, Curtis, Meredith, Zarrei, Mehdi, Higginbotham, Edward J., Chan, Ada J. S., Engchuan, Worrawat, Thiruvahindrapuram, Bhooma, Scherer, Stephen W., Kim, Raymond H., Jobling, Rebekah K.

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Genome-wide rare variant score associates with morphological subtypes of autism spectrum disorder von Chan, Ada J. S., Engchuan, Worrawat, Reuter, Miriam S., Wang, Zhuozhi, Thiruvahindrapuram, Bhooma, Trost, Brett, Nalpathamkalam, Thomas, Negrijn, Carol, Lamoureux, Sylvia, Pellecchia, Giovanna, Patel, Rohan V., Sung, Wilson W. L., MacDonald, Jeffrey R., Howe, Jennifer L., Vorstman, Jacob, Sondheimer, Neal, Takahashi, Nicole, Miles, Judith H., Anagnostou, Evdokia, Tammimies, Kristiina, Zarrei, Mehdi, Merico, Daniele, Stavropoulos, Dimitri J., Yuen, Ryan K. C., Fernandez, Bridget A., Scherer, Stephen W.

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A Comprehensive Workflow for Read Depth-Based Identification of Copy-Number Variation from Whole-Genome Sequence Data von Trost, Brett, Walker, Susan, Wang, Zhuozhi, Thiruvahindrapuram, Bhooma, MacDonald, Jeffrey R., Sung, Wilson W.L., Pereira, Sergio L., Whitney, Joe, Chan, Ada J.S., Pellecchia, Giovanna, Reuter, Miriam S., Lok, Si, Yuen, Ryan K.C., Marshall, Christian R., Merico, Daniele, Scherer, Stephen W.

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A large data resource of genomic copy number variation across neurodevelopmental disorders von Zarrei, Mehdi, Burton, Christie L., Engchuan, Worrawat, Young, Edwin J., Higginbotham, Edward J., MacDonald, Jeffrey R., Trost, Brett, Chan, Ada J. S., Walker, Susan, Lamoureux, Sylvia, Heung, Tracy, Mojarad, Bahareh A., Kellam, Barbara, Paton, Tara, Faheem, Muhammad, Miron, Karin, Lu, Chao, Wang, Ting, Samler, Kozue, Wang, Xiaolin, Costain, Gregory, Hoang, Ny, Pellecchia, Giovanna, Wei, John, Patel, Rohan V., Thiruvahindrapuram, Bhooma, Roifman, Maian, Merico, Daniele, Goodale, Tara, Drmic, Irene, Speevak, Marsha, Howe, Jennifer L., Yuen, Ryan K. C., Buchanan, Janet A., Vorstman, Jacob A. S., Marshall, Christian R., Wintle, Richard F., Rosenberg, David R., Hanna, Gregory L., Woodbury-Smith, Marc, Cytrynbaum, Cheryl, Zwaigenbaum, Lonnie, Elsabbagh, Mayada, Flanagan, Janine, Fernandez, Bridget A., Carter, Melissa T., Szatmari, Peter, Roberts, Wendy, Lerch, Jason, Liu, Xudong, Nicolson, Rob, Georgiades, Stelios, Weksberg, Rosanna, Arnold, Paul D., Bassett, Anne S., Crosbie, Jennifer, Schachar, Russell, Stavropoulos, Dimitri J., Anagnostou, Evdokia, Scherer, Stephen W.

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Meta‐Analyses Support Previous and Novel Autism Candidate Genes: Outcomes of an Unexplored Brazilian Cohort von da Silva Montenegro, Eduarda Morgana, Costa, Claudia Samogy, Campos, Gabriele, Scliar, Marília, Almeida, Tatiana Ferreira, Zachi, Elaine Cristina, Silva, Isabela Maya Wahys, Chan, Ada J. S., Zarrei, Mehdi, Lourenço, Naila C. V., Yamamoto, Guilherme Lopes, Scherer, Stephen, Passos‐Bueno, Maria Rita

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Expanding the neurodevelopmental phenotypes of individuals with de novo KMT2A variants von Chan, Ada J. S., Cytrynbaum, Cheryl, Hoang, Ny, Ambrozewicz, Patricia M., Weksberg, Rosanna, Drmic, Irene, Ritzema, Anne, Schachar, Russell, Walker, Susan, Uddin, Mohammed, Zarrei, Mehdi, Yuen, Ryan K. C., Scherer, Stephen W.

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Genomic Context Analysis of de Novo STXBP1 Mutations Identifies Evidence of Splice Site DNA-Motif Associated Hotspots von Uddin, Mohammed, Woodbury-Smith, Marc, Chan, Ada J S, Albanna, Ammar, Minassian, Berge, Boelman, Cyrus, Scherer, Stephen W

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Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder von C Yuen, Ryan K, Merico, Daniele, Bookman, Matt, L Howe, Jennifer, Thiruvahindrapuram, Bhooma, Patel, Rohan V, Whitney, Joe, Deflaux, Nicole, Bingham, Jonathan, Wang, Zhuozhi, Pellecchia, Giovanna, Buchanan, Janet A, Walker, Susan, Marshall, Christian R, Uddin, Mohammed, Zarrei, Mehdi, Deneault, Eric, D'Abate, Lia, Chan, Ada J S, Koyanagi, Stephanie, Paton, Tara, Pereira, Sergio L, Hoang, Ny, Engchuan, Worrawat, Higginbotham, Edward J, Ho, Karen, Lamoureux, Sylvia, Li, Weili, MacDonald, Jeffrey R, Nalpathamkalam, Thomas, Sung, Wilson W L, Tsoi, Fiona J, Wei, John, Xu, Lizhen, Tasse, Anne-Marie, Kirby, Emily, Van Etten, William, Twigger, Simon, Roberts, Wendy, Drmic, Irene, Jilderda, Sanne, Modi, Bonnie MacKinnon, Kellam, Barbara, Szego, Michael, Cytrynbaum, Cheryl, Weksberg, Rosanna, Zwaigenbaum, Lonnie, Woodbury-Smith, Marc, Brian, Jessica, Senman, Lili, Iaboni, Alana, Doyle-Thomas, Krissy, Thompson, Ann, Chrysler, Christina, Leef, Jonathan, Savion-Lemieux, Tal, Smith, Isabel M, Liu, Xudong, Nicolson, Rob, Seifer, Vicki, Fedele, Angie, Cook, Edwin H, Dager, Stephen, Estes, Annette, Gallagher, Louise, Malow, Beth A, Parr, Jeremy R, Spence, Sarah J, Vorstman, Jacob, Frey, Brendan J, Robinson, James T, Strug, Lisa J, Fernandez, Bridget A, Elsabbagh, Mayada, Carter, Melissa T, Hallmayer, Joachim, Knoppers, Bartha M, Anagnostou, Evdokia, Szatmari, Peter, Ring, Robert H, Glazer, David, Pletcher, Mathew T, Scherer, Stephen W

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Genomic architecture of autism from comprehensive whole-genome sequence annotation von Trost, Brett, Thiruvahindrapuram, Bhooma, Chan, Ada J.S., Engchuan, Worrawat, Higginbotham, Edward J., Howe, Jennifer L., Loureiro, Livia O., Reuter, Miriam S., Roshandel, Delnaz, Whitney, Joe, Zarrei, Mehdi, Bookman, Matthew, Somerville, Cherith, Shaath, Rulan, Abdi, Mona, Aliyev, Elbay, Patel, Rohan V., Pellecchia, Giovanna, Hamdan, Omar, Kaur, Gaganjot, Wang, Zhuozhi, MacDonald, Jeffrey R., Wei, John, Sung, Wilson W.L., Lamoureux, Sylvia, Hoang, Ny, Selvanayagam, Thanuja, Deflaux, Nicole, Geng, Melissa, Ghaffari, Siavash, Bates, John, Young, Edwin J., Ding, Qiliang, Shum, Carole, D'Abate, Lia, Bradley, Clarrisa A., Rutherford, Annabel, Aguda, Vernie, Apresto, Beverly, Chen, Nan, Desai, Sachin, Du, Xiaoyan, Fong, Matthew L.Y., Pullenayegum, Sanjeev, Samler, Kozue, Wang, Ting, Ho, Karen, Paton, Tara, Pereira, Sergio L., Herbrick, Jo-Anne, Fuerth, Jonathan, Noppornpitak, Juti, Ward, Heather, Magee, Patrick, Al Baz, Ayman, Kajendirarajah, Usanthan, Vlasblom, Jim, Valluri, Monica, Green, Joseph, Seifer, Vicki, Quirbach, Morgan, Rennie, Olivia, Kelley, Elizabeth, Masjedi, Nina, Lord, Catherine, Szego, Michael J., Zawati, Ma'n H., Lang, Michael, Strug, Lisa J., Marshall, Christian R., Costain, Gregory, Calli, Kristina, Iaboni, Alana, Yusuf, Afiqah, Ambrozewicz, Patricia, Gallagher, Louise, Amaral, David G., Brian, Jessica, Elsabbagh, Mayada, Georgiades, Stelios, Messinger, Daniel S., Ozonoff, Sally, Sebat, Jonathan, Sjaarda, Calvin, Smith, Isabel M., Szatmari, Peter, Zwaigenbaum, Lonnie, Kushki, Azadeh, Frazier, Thomas W., Vorstman, Jacob A.S., Fakhro, Khalid A., Fernandez, Bridget A., Lewis, M.E. Suzanne, Weksberg, Rosanna, Fiume, Marc, Yuen, Ryan K.C., Anagnostou, Evdokia, Sondheimer, Neal, Glazer, David, Hartley, Dean M.

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Bacteroides fragilis Toxin Coordinates a Pro-carcinogenic Inflammatory Cascade via Targeting of Colonic Epithelial Cells von Chung, Liam, Thiele Orberg, Erik, Geis, Abby L., Chan, June L., Fu, Kai, DeStefano Shields, Christina E., Dejea, Christine M., Fathi, Payam, Chen, Jie, Finard, Benjamin B., Tam, Ada J., McAllister, Florencia, Fan, Hongni, Wu, Xinqun, Ganguly, Sudipto, Lebid, Andriana, Metz, Paul, Van Meerbeke, Sara W., Huso, David L., Wick, Elizabeth C., Pardoll, Drew M., Wan, Fengyi, Wu, Shaoguang, Sears, Cynthia L., Housseau, Franck

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Human Colon Cancer-Derived Clostridioides difficile Strains Drive Colonic Tumorigenesis in Mice von Drewes, Julia L, Chen, Jie, Markham, Nicholas O, Knippel, Reece J, Domingue, Jada C, Tam, Ada J, Chan, June L, Kim, Lana, McMann, Madison, Stevens, Courtney, Dejea, Christine M, Tomkovich, Sarah, Michel, John, White, James R, Mohammad, Fuad, Campodónico, Victoria L, Heiser, Cody N, Wu, Xinqun, Wu, Shaoguang, Ding, Hua, Simner, Patricia, Carroll, Karen, Shrubsole, Martha J, Anders, Robert A, Walk, Seth T, Jobin, Christian, Wan, Fengyi, Coffey, Robert J, Housseau, Franck, Lau, Ken S, Sears, Cynthia L

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Quantum isomorphism of graphs from association schemes von Chan, Ada, Martin, William J.

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Non-toxigenic Bacteroides fragilis (NTBF) administration reduces bacteria-driven chronic colitis and tumor development independent of polysaccharide A von Chan, June L., Wu, Shaoguang, Geis, Abby L., Chan, Gabrielle V., Gomes, Talles A. M., Beck, Sarah E., Wu, Xinqun, Fan, Hongni, Tam, Ada J., Chung, Liam, Ding, Hua, Wang, Hao, Pardoll, Drew M., Housseau, Franck, Sears, Cynthia L.

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Bacterial-Driven Inflammation and Mutant BRAF Expression Combine to Promote Murine Colon Tumorigenesis That Is Sensitive to Immune Checkpoint Therapy von Shields, Christina E. DeStefano, White, James R., Chung, Liam, Wenzel, Alyssa, Hicks, Jessica L., Tam, Ada J., Chan, June L., Dejea, Christine M., Fan, Hongni, Michel, John, Maiuri, Ashley R., Sriramkumar, Shruthi, Podicheti, Ram, Rusch, Douglas B., Wang, Hao, De Marzo, Angelo M., Besharati, Sepideh, Anders, Robert A., Baylin, Stephen B., O'Hagan, Heather M., Housseau, Franck, Sears, Cynthia L.

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Targeting glutamine metabolism enhances tumor-specific immunity by modulating suppressive myeloid cells von Oh, Min-Hee, Sun, Im-Hong, Zhao, Liang, Leone, Robert D., Sun, Im-Meng, Xu, Wei, Collins, Samuel L., Tam, Ada J., Blosser, Richard L., Patel, Chirag H., Englert, Judson M., Arwood, Matthew L., Wen, Jiayu, Chan-Li, Yee, Tenora, Lukas, Majer, Pavel, Rais, Rana, Slusher, Barbara S., Horton, Maureen R., Powell, Jonathan D.

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Bridging the gap in the prevention of respiratory syncytial virus infection among older adults in Hong Kong von Hung, I F N, Lin, A W C, Chan, J C K, Chan, T N H, Eng, P, Lo, A H Y, Wong, M C S, Wong, W K K

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RNA interference targeting HBx suppresses tumor growth and enhances cisplatin chemosensitivity in human hepatocellular carcinoma von Cheng, Alfred S.L, Wong, Nathalie, Tse, Ada M.Y, Chan, Kathy Y.Y, Chan, Kai K, Sung, Joseph J.Y, Chan, Henry L.Y

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The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay von Shum, Eleen Y., Jones, Samantha H., Shao, Ada, Chousal, Jennifer N., Krause, Matthew D., Chan, Wai-Kin, Lou, Chih-Hong, Espinoza, Josh L., Song, Hye-Won, Phan, Mimi H., Ramaiah, Madhuvanthi, Huang, Lulu, McCarrey, John R., Peterson, Kevin J., De Rooij, Dirk G., Cook-Andersen, Heidi, Wilkinson, Miles F.

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Compartmental Analysis of T-cell Clonal Dynamics as a Function of Pathologic Response to Neoadjuvant PD-1 Blockade in Resectable Non-Small Cell Lung Cancer von Zhang, Jiajia, Ji, Zhicheng, Caushi, Justina X., El Asmar, Margueritta, Anagnostou, Valsamo, Cottrell, Tricia R., Chan, Hok Yee, Suri, Prerna, Guo, Haidan, Merghoub, Taha, Chaft, Jamie E., Reuss, Joshua E., Tam, Ada J., Blosser, Richard L., Abu-Akeel, Mohsen, Sidhom, John-William, Zhao, Ni, Ha, Jinny S., Jones, David R., Marrone, Kristen A., Naidoo, Jarushka, Gabrielson, Edward, Taube, Janis M., Velculescu, Victor E., Brahmer, Julie R., Housseau, Franck, Hellmann, Matthew D., Forde, Patrick M., Pardoll, Drew M., Ji, Hongkai, Smith, Kellie N.

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