Ten simple rules for creating a global network in computational biology von Adams, Jenea Imani, Ferebee, Taylor, Minto, Melyssa, Pennerman, Kayla K, Chambwe, Nyasha

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A cervical cancer biorepository for pharmacogenomics research in Zimbabwe von Kuguyo, Oppah, Chambwe, Nyasha, Nhachi, Charles F B, Tsikai, Nomsa, Dandara, Collet, Matimba, Alice

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DNA Methylation Dynamics of Germinal Center B Cells Are Mediated by AID von Dominguez, Pilar M., Teater, Matt, Chambwe, Nyasha, Kormaksson, Matthias, Redmond, David, Ishii, Jennifer, Vuong, Bao, Chaudhuri, Jayanta, Melnick, Ari, Vasanthakumar, Aparna, Godley, Lucy A., Papavasiliou, F. Nina, Elemento, Olivier, Shaknovich, Rita

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Compression of structured high-throughput sequencing data von Campagne, Fabien, Dorff, Kevin C, Chambwe, Nyasha, Robinson, James T, Mesirov, Jill P

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SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery [version 2; peer review: 2 approved] von Tercan, Bahar, Qin, Guangrong, Kim, Taek-Kyun, Aguilar, Boris, Phan, John, Longabaugh, William, Pot, David, Kemp, Christopher J., Chambwe, Nyasha, Shmulevich, Ilya

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GobyWeb: simplified management and analysis of gene expression and DNA methylation sequencing data von Dorff, Kevin C, Chambwe, Nyasha, Zeno, Zachary, Simi, Manuele, Shaknovich, Rita, Campagne, Fabien

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SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery [version 1; peer review: 1 approved, 1 approved with reservations] von Tercan, Bahar, Qin, Guangrong, Kim, Taek-Kyun, Aguilar, Boris, Phan, John, Longabaugh, William, Pot, David, Kemp, Christopher J., Chambwe, Nyasha, Shmulevich, Ilya

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Integrative modeling identifies genetic ancestry-associated molecular correlates in human cancer von Robertson, A. Gordon, Yau, Christina, Carrot-Zhang, Jian, Damrauer, Jeffrey S., Knijnenburg, Theo A., Chambwe, Nyasha, Hoadley, Katherine A., Kemal, Anab, Zenklusen, Jean C., Cherniack, Andrew D., Beroukhim, Rameen, Zhou, Wanding

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Analysis of germline-driven ancestry-associated gene expression in cancers von Chambwe, Nyasha, Sayaman, Rosalyn W., Hu, Donglei, Huntsman, Scott, Carrot-Zhang, Jian, Berger, Ashton C., Han, Seunghun, Meyerson, Matthew, Damrauer, Jeffrey S., Hoadley, Katherine A., Felau, Ina, Demchok, John A., Mensah, Michael K.A., Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Knijnenburg, Theo A., Robertson, A. Gordon, Yau, Christina, Benz, Christopher, Huang, Kuan-lin, Newberg, Justin Y., Frampton, Garrett M., Mashl, R. Jay, Ding, Li, Romanel, Alessandro, Demichelis, Francesca, Zhou, Wanding, Laird, Peter W., Shen, Hui, Wong, Christopher K., Stuart, Joshua M., Lazar, Alexander J., Le, Xiuning, Oak, Ninad, Kemal, Anab, Caesar-Johnson, Samantha, Zenklusen, Jean C., Ziv, Elad, Beroukhim, Rameen, Cherniack, Andrew D.

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Analytical protocol to identify local ancestry-associated molecular features in cancer von Carrot-Zhang, Jian, Han, Seunghun, Zhou, Wanding, Damrauer, Jeffrey S., Kemal, Anab, Berger, Ashton C., Meyerson, Matthew, Hoadley, Katherine A., Felau, Ina, Caesar-Johnson, Samantha, Demchok, John A., Mensah, Michael K.A., Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean C., Chambwe, Nyasha, Knijnenburg, Theo A., Robertson, A. Gordon, Yau, Christina, Benz, Christopher, Huang, Kuan-lin, Newberg, Justin, Frampton, Garret, Mashl, R. Jay, Ding, Li, Romanel, Alessandro, Demichelis, Francesca, Sayaman, Rosalyn W., Ziv, Elad, Laird, Peter W., Shen, Hui, Wong, Christopher K., Stuart, Joshua M., Lazar, Alexander J., Le, Xiuning, Oak, Ninad, Cherniack, Andrew D., Beroukhim, Rameen

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Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms von Belleau, Pascal, Deschênes, Astrid, Chambwe, Nyasha, Tuveson, David A, Krasnitz, Alexander

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Active learning narrows achievement gaps for underrepresented students in undergraduate science, technology, engineering, and math von Theobald, Elli J., Hill, Mariah J., Tran, Elisa, Agrawal, Sweta, Arroyo, E. Nicole, Behling, Shawn, Chambwe, Nyasha, Cintrón, Dianne Laboy, Cooper, Jacob D., Dunster, Gideon, Grummer, Jared A., Hennessey, Kelly, Hsiao, Jennifer, Iranon, Nicole, Jones, Leonard, Jordt, Hannah, Keller, Marlowe, Lacey, Melissa E., Littlefield, Caitlin E., Lowe, Alexander, Newman, Shannon, Okolo, Vera, Olroyd, Savannah, Peecook, Brandon R., Pickett, Sarah B., Slager, David L., Caviedes-Solis, Itzue W., Stanchak, Kathryn E., Sundaravardan, Vasudha, Valdebenito, Camila, Williams, Claire R., Zinsli, Kaitlin, Freeman, Scott

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Analysis and optimization of equitable US cancer clinical trial center access by travel time von Lee, Hassal, Bates, Alexander, Marshall, Andrea, Callier, Shawneequa, Chambwe, Nyasha, Janowitz, Tobias

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Correction: Genetic Ancestry Inference from Cancer-Derived Molecular Data across Genomic and Transcriptomic Platforms von Belleau, Pascal, Deschênes, Astrid, Chambwe, Nyasha, Tuveson, David A, Krasnitz, Alexander

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Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer von Carrot-Zhang, Jian, Chambwe, Nyasha, Damrauer, Jeffrey S., Knijnenburg, Theo A., Robertson, A. Gordon, Yau, Christina, Zhou, Wanding, Berger, Ashton C., Huang, Kuan-lin, Newberg, Justin Y., Mashl, R. Jay, Romanel, Alessandro, Sayaman, Rosalyn W., Demichelis, Francesca, Felau, Ina, Frampton, Garrett M., Han, Seunghun, Hoadley, Katherine A., Kemal, Anab, Laird, Peter W., Lazar, Alexander J., Le, Xiuning, Oak, Ninad, Shen, Hui, Wong, Christopher K., Zenklusen, Jean C., Ziv, Elad, Aguet, Francois, Ding, Li, Demchok, John A., Mensah, Michael K.A., Caesar-Johnson, Samantha, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Alfoldi, Jessica, Karczewski, Konrad J., MacArthur, Daniel G., Meyerson, Matthew, Benz, Christopher, Stuart, Joshua M., Cherniack, Andrew D., Beroukhim, Rameen

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1227 A NOVEL CLINICAL AND BIOMARKER MODEL BASED ON TGF-B SUPERFAMILY SIGNALING PROTEINS IMPROVES ON AFP AND THE DOYLESTOWN MODEL IN PREDICTING HEPATOCELLULAR CARCINOMA ACROSS RACIA... von Amdur, Richard L., Shetty, Kirti, Xiang, Xiyan, Crawford, James M., Latham, Patricia S., Wong, Linda L., Yu, Herbert, Tran, Chuong T., Chambwe, Nyasha, Bernstein, David, Brennan, Christina, Dima, Richard J., Satapathy, Sanjaya K., Kundra, Vikas, Grimaldi, Gregory, Mishra, Lopa

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COMP-04. MODELING PRECISION ONCOLOGY FOR GLIOBLASTOMA THROUGH INTEGRATION OF DESCRIPTIVE, FUNCTIONAL, AND NETWORK-BASED GENOMICS von Hoellerbauer, Pia, Kufeld, Megan, Arora, Sonali, Girard, Emily, Olson, James, Biery, Matthew, Chambwe, Nyasha, Paddison, Patrick

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Genomic and molecular characterization of preterm birth von Knijnenburg, Theo A., Vockley, Joseph G., Chambwe, Nyasha, Gibbs, David L., Humphries, Crystal, Huddleston, Kathi C., Klein, Elisabeth, Kothiyal, Prachi, Tasseff, Ryan, Dhankani, Varsha, Bodian, Dale L., Wong, Wendy S. W., Glusman, Gustavo, Mauldin, Denise E., Miller, Michael, Slagel, Joseph, Elasady, Summer, Roach, Jared C., Kramer, Roger, Leinonen, Kalle, Linthorst, Jasper, Baveja, Rajiv, Baker, Robin, Solomon, Benjamin D., Eley, Greg, Iyer, Ramaswamy K., Maxwell, George L., Bernard, Brady, Shmulevich, Ilya, Hood, Leroy, Niederhuber, John E.

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Variability in DNA methylation defines novel epigenetic subgroups of DLBCL associated with different clinical outcomes von Chambwe, Nyasha, Kormaksson, Matthias, Geng, Huimin, De, Subhajyoti, Michor, Franziska, Johnson, Nathalie A., Morin, Ryan D., Scott, David W., Godley, Lucy A., Gascoyne, Randy D., Melnick, Ari, Campagne, Fabien, Shaknovich, Rita

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Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations von Rutherford, Sarah C., Fachel, Angela A., Li, Sheng, Sawh, Seema, Muley, Ashlesha, Ishii, Jennifer, Saxena, Ashish, Dominguez, Pilar M., Caldas Lopes, Eloisi, Agirre, Xabier, Chambwe, Nyasha, Correa, Fabian, Jiang, Yanwen, Richards, Kristy L., Betel, Doron, Shaknovich, Rita

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