Lessons in de novo peptide sequencing by tandem mass spectrometry von Medzihradszky, Katalin F., Chalkley, Robert J.

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination von Vizcaíno, Juan A, Deutsch, Eric W, Wang, Rui, Csordas, Attila, Reisinger, Florian, Ríos, Daniel, Dianes, José A, Sun, Zhi, Farrah, Terry, Bandeira, Nuno, Binz, Pierre-Alain, Xenarios, Ioannis, Eisenacher, Martin, Mayer, Gerhard, Gatto, Laurent, Campos, Alex, Chalkley, Robert J, Kraus, Hans-Joachim, Albar, Juan Pablo, Martinez-Bartolomé, Salvador, Apweiler, Rolf, Omenn, Gilbert S, Martens, Lennart, Jones, Andrew R, Hermjakob, Henning

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Methods for Enrichment and Assignment of N-Acetylglucosamine Modification Sites von Maynard, Jason C., Chalkley, Robert J.

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Tissue-Specific Glycosylation at the Glycopeptide Level von Medzihradszky, Katalin F., Kaasik, Krista, Chalkley, Robert J.

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Improving the Depth and Reliability of Glycopeptide Identification Using Protein Prospector von Chalkley, Robert J., Baker, Peter R.

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PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3 von Ni, Weimin, Xu, Shou-Ling, González-Grandío, Eduardo, Chalkley, Robert J., Huhmer, Andreas F. R., Burlingame, Alma L., Wang, Zhi-Yong, Quail, Peter H.

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Modification Site Localization Scoring: Strategies and Performance von Chalkley, Robert J., Clauser, Karl R.

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Glucose Sensor O-GlcNAcylation Coordinates with Phosphorylation to Regulate Circadian Clock von Kaasik, Krista, Kivimäe, Saul, Allen, Jasmina J., Chalkley, Robert J., Huang, Yong, Baer, Kristin, Kissel, Holger, Burlingame, Alma L., Shokat, Kevan M., Ptáček, Louis J., Fu, Ying-Hui

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Characterizing Sialic Acid Variants at the Glycopeptide Level von Medzihradszky, Katalin F, Kaasik, Krista, Chalkley, Robert J

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Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry von Leitner, Alexander, Bonvin, Alexandre M.J.J., Borchers, Christoph H., Chalkley, Robert J., Chamot-Rooke, Julia, Combe, Colin W., Cox, Jürgen, Dong, Meng-Qiu, Fischer, Lutz, Götze, Michael, Gozzo, Fabio C., Heck, Albert J.R., Hoopmann, Michael R., Huang, Lan, Ishihama, Yasushi, Jones, Andrew R., Kalisman, Nir, Kohlbacher, Oliver, Mechtler, Karl, Moritz, Robert L., Netz, Eugen, Novak, Petr, Petrotchenko, Evgeniy, Sali, Andrej, Scheltema, Richard A., Schmidt, Carla, Schriemer, David, Sinz, Andrea, Sobott, Frank, Stengel, Florian, Thalassinos, Konstantinos, Urlaub, Henning, Viner, Rosa, Vizcaíno, Juan A., Wilkins, Marc R., Rappsilber, Juri

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Peripheral Elevation of a Klotho Fragment Enhances Brain Function and Resilience in Young, Aging, and α-Synuclein Transgenic Mice von Leon, Julio, Moreno, Arturo J., Garay, Bayardo I., Chalkley, Robert J., Burlingame, Alma L., Wang, Dan, Dubal, Dena B.

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Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides von Chalkley, Robert J, Thalhammer, Agnes, Schoepfer, Ralf, Burlingame, A.L

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Use of a mutant OGA for detecting O-GlcNAc modified proteins von Chalkley, Robert J

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Revealing nascent proteomics in signaling pathways and cell differentiation von Forester, Craig M., Zhao, Qian, Phillips, Nancy J., Urisman, Anatoly, Chalkley, Robert J., Oses-Prieto, Juan A., Zhang, Li, Ruggero, Davide, Burlingame, Alma L.

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Use of a glycosylation site database to improve glycopeptide identification from complex mixtures von Chalkley, Robert J., Baker, Peter R.

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The effect of using an inappropriate protein database for proteomic data analysis von Knudsen, Giselle M, Chalkley, Robert J

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SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis von Bi, Yang, Shrestha, Ruben, Zhang, Zhenzhen, Hsu, Chuan-Chih, Reyes, Andres V, Karunadasa, Sumudu, Baker, Peter R, Maynard, Jason C, Liu, Yang, Hakimi, Amirmansoor, Lopez-Ferrer, Daniel, Hassan, Tahmid, Chalkley, Robert J, Xu, Shou-Ling, Wang, Zhi-Yong

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Multisite Light-Induced Phosphorylation of the Transcription Factor PIF3 Is Necessary for Both Its Rapid Degradation and Concomitant Negative Feedback Modulation of Photoreceptor p... von Ni, Weimin, Xu, Shou-Ling, Chalkley, Robert J., Pham, Thao Nguyen D., Guan, Shenheng, Maltby, Dave A., Burlingame, Alma L., Wang, Zhi-Yong, Quail, Peter H.

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Proteomic analysis reveals O-GlcNAc modification on proteins with key regulatory functions in Arabidopsis von Xu, Shou-Ling, Chalkley, Robert J., Maynard, Jason C., Wang, Wenfei, Ni, Weimin, Jiang, Xiaoyue, Shin, Kihye, Cheng, Ling, Savage, Dasha, Hühmer, Andreas F. R., Burlingame, Alma L., Wang, Zhi-Yong

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Matching Cross-linked Peptide Spectra: Only as Good as the Worse Identification von Trnka, Michael J., Baker, Peter R., Robinson, Philip J.J., Burlingame, A.L., Chalkley, Robert J.

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