Calibration-Free WMS Using a cw-DFB-QCL, a VCSEL, and an Edge-Emitting DFB Laser With In-Situ Real-Time Laser Parameter Characterization von Upadhyay, Abhishek, Wilson, David, Lengden, Michael, Chakraborty, Arup L., Stewart, George, Johnstone, Walter

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Fiber Bragg grating technology for biomedical ultrasound applications von Shekhar, Himanshu, Jajoria, Kuldeep, Jha, Chandan K., Chakraborty, Arup L.

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Translating HIV Sequences into Quantitative Fitness Landscapes Predicts Viral Vulnerabilities for Rational Immunogen Design von Ferguson, Andrew L., Mann, Jaclyn K., Omarjee, Saleha, Ndung’u, Thumbi, Walker, Bruce D., Chakraborty, Arup K.

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Coactivator condensation at super-enhancers links phase separation and gene control von Sabari, Benjamin R, Dall'Agnese, Alessandra, Boija, Ann, Klein, Isaac A, Coffey, Eliot L, Shrinivas, Krishna, Abraham, Brian J, Hannett, Nancy M, Zamudio, Alicia V, Manteiga, John C, Li, Charles H, Guo, Yang E, Day, Daniel S, Schuijers, Jurian, Vasile, Eliza, Malik, Sohail, Hnisz, Denes, Lee, Tong Ihn, Cisse, Ibrahim I, Roeder, Robert G, Sharp, Phillip A, Chakraborty, Arup K, Young, Richard A

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Enhancer Features that Drive Formation of Transcriptional Condensates von Shrinivas, Krishna, Sabari, Benjamin R., Coffey, Eliot L., Klein, Isaac A., Boija, Ann, Zamudio, Alicia V., Schuijers, Jurian, Hannett, Nancy M., Sharp, Phillip A., Young, Richard A., Chakraborty, Arup K.

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Multiscale affinity maturation simulations to elicit broadly neutralizing antibodies against HIV von Conti, Simone, Ovchinnikov, Victor, Faris, Jonathan G, Chakraborty, Arup K, Karplus, Martin, Sprenger, Kayla G

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Coreceptor Scanning by the T Cell Receptor Provides a Mechanism for T Cell Tolerance von Stepanek, Ondrej, Prabhakar, Arvind S., Osswald, Celine, King, Carolyn G., Bulek, Anna, Naeher, Dieter, Beaufils-Hugot, Marina, Abanto, Michael L., Galati, Virginie, Hausmann, Barbara, Lang, Rosemarie, Cole, David K., Huseby, Eric S., Sewell, Andrew K., Chakraborty, Arup K., Palmer, Ed

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PIP5K1C phosphoinositide kinase deficiency distinguishes PIKFYVE-dependent cancer cells from non-malignant cells von Roy, Ajit, Chakraborty, Arup R., Nomanbhoy, Tyzoon, DePamphilis, Melvin L.

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PIKFYVE inhibitors trigger interleukin‐24‐dependent cell death of autophagy‐dependent melanoma von Roy, Ajit, Chakraborty, Arup R., DePamphilis, Melvin L.

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Continuous immunotypes describe human immune variation and predict diverse responses von Kaczorowski, Kevin J., Shekhar, Karthik, Nkulikiyimfura, Dieudonné, Dekker, Cornelia L., Maecker, Holden, Davis, Mark M., Chakraborty, Arup K., Brodin, Petter

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Understanding the structure and function of the immunological synapse von Dustin, Michael L, Chakraborty, Arup K, Shaw, Andrey S

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Optimal immunization cocktails can promote induction of broadly neutralizing Abs against highly mutable pathogens von Shaffer, J. Scott, Moore, Penny L., Kardar, Mehran, Chakraborty, Arup K.

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Deconstruction of the Ras switching cycle through saturation mutagenesis von Bandaru, Pradeep, Shah, Neel H, Bhattacharyya, Moitrayee, Barton, John P, Kondo, Yasushi, Cofsky, Joshua C, Gee, Christine L, Chakraborty, Arup K, Kortemme, Tanja, Ranganathan, Rama, Kuriyan, John

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Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA von Lorenzi, Julio C. C., Cohen, Yehuda Z., Cohn, Lillian B., Kreider, Edward F., Barton, John P., Learn, Gerald H., Oliveira, Thiago, Lavine, Christy L., Horwitz, Joshua A., Settler, Allison, Jankovic, Mila, Seaman, Michael S., Chakraborty, Arup K., Hahn, Beatrice H., Caskey, Marina, Nussenzweig, Michel C.

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Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes von Shekhar, Karthik, Ruberman, Claire F, Ferguson, Andrew L, Barton, John P, Kardar, Mehran, Chakraborty, Arup K

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The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing von Mann, Jaclyn K, Barton, John P, Ferguson, Andrew L, Omarjee, Saleha, Walker, Bruce D, Chakraborty, Arup, Ndung'u, Thumbi

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Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection von Košmrlj, Andrej, Read, Elizabeth L., Qi, Ying, Allen, Todd M., Altfeld, Marcus, Deeks, Steven G., Pereyra, Florencia, Carrington, Mary, Walker, Bruce D., Chakraborty, Arup K.

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Monovalent engagement of the BCR activates ovalbumin-specific transnuclear B cells von Avalos, Ana M, Bilate, Angelina M, Witte, Martin D, Tai, Albert K, He, Jiang, Frushicheva, Maria P, Thill, Peter D, Meyer-Wentrup, Friederike, Theile, Christopher S, Chakraborty, Arup K, Zhuang, Xiaowei, Ploegh, Hidde L

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Computational prediction of broadly neutralizing HIV-1 antibody epitopes from neutralization activity data von Ferguson, Andrew L, Falkowska, Emilia, Walker, Laura M, Seaman, Michael S, Burton, Dennis R, Chakraborty, Arup K

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MAPK pathway activation leads to Bim loss and histone deacetylase inhibitor resistance: rationale to combine romidepsin with an MEK inhibitor von Chakraborty, Arup R., Robey, Robert W., Luchenko, Victoria L., Zhan, Zhirong, Piekarz, Richard L., Gillet, Jean-Pierre, Kossenkov, Andrew V., Wilkerson, Julia, Showe, Louise C., Gottesman, Michael M., Collie, Nathan L., Bates, Susan E.

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