Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life von Shakya, Migun, Ahmed, Sanaa A., Davenport, Karen W., Flynn, Mark C., Lo, Chien-Chi, Chain, Patrick S. G.

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MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential von Rawat, Manmeet, Kadian, Kavita, Gupta, Yash, Kumar, Anand, Chain, Patrick S G, Kovbasnjuk, Olga, Kumar, Suneel, Parasher, Gulshan

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Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil von Kielak, Anna, Rodrigues, Jorge L.M, Kuramae, Eiko E, Chain, Patrick S.G, van Veen, Johannes A, Kowalchuk, George A

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Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi von Junier, Pilar, Cailleau, Guillaume, Palmieri, Ilona, Vallotton, Celine, Trautschold, Olivia C, Junier, Thomas, Paul, Christophe, Bregnard, Danae, Palmieri, Fabio, Estoppey, Aislinn, Buffi, Matteo, Lohberger, Andrea, Robinson, Aaron, Kelliher, Julia M, Davenport, Karen, House, Geoffrey L, Morales, Demosthenes, Gallegos-Graves, La Verne, Dichosa, Armand E K, Lupini, Simone, Nguyen, Hang N, Young, Jamey D, Rodrigues, Debora F, Parra-Vasquez, A Nicholas G, Bindschedler, Saskia, Chain, Patrick S G

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Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres von Swan, Brandon K, Chaffin, Mark D, Martinez-Garcia, Manuel, Morrison, Hilary G, Field, Erin K, Poulton, Nicole J, Masland, E Dashiell P, Harris, Christopher C, Sczyrba, Alexander, Chain, Patrick S G, Koren, Sergey, Woyke, Tanja, Stepanauskas, Ramunas

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The impact of genome analyses on our understanding of ammonia-oxidizing bacteria von ARP, Daniel J, CHAIN, Patrick S. G, KLOTZ, Martin G

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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment von Norton, Jeanette M, Klotz, Martin G, Stein, Lisa Y, Arp, Daniel J, Bottomley, Peter J, Chain, Patrick S.G, Hauser, Loren J, Land, Miriam L, Larimer, Frank W, Shin, Maria W, Starkenburg, Shawn R

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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia-oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococc... von Campbell, Mark A, Chain, Patrick S.G, Dang, Hongyue, El Sheikh, Amal F, Norton, Jeanette M, Ward, Naomi L, Ward, Bess B, Klotz, Martin G

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Uncovering the Core Microbiome and Distribution of Palmerolide in Synoicum adareanum Across the Anvers Island Archipelago , Antarctica von Murray, Alison E, Avalon, Nicole E, Bishop, Lucas, Davenport, Karen W, Delage, Erwan, Dichosa, Armand E K, Eveillard, Damien, Higham, Mary L, Kokkaliari, Sofia, Lo, Chien-Chi, Riesenfeld, Christian S, Young, Ryan M, Chain, Patrick S G, Baker, Bill J

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Multiple genome sequences reveal adaptations of a phototrophic bacterium to sediment microenvironments von Oda, Yasuhiro, Larimer, Frank W, Chain, Patrick S.G, Malfatti, Stephanie, Shin, Maria V, Vergez, Lisa M, Hauser, Loren, Land, Miriam L, Braatsch, Stephan, Beatty, J. Thomas, Pelletier, Dale A, Schaefer, Amy L, Harwood, Caroline S

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Epigenetic regulation of gene expression in Shiga toxin-producing Escherichia coli: Transcriptomic data von Carter, Michelle Qiu, Hu, Bin, Chain, Patrick S.G.

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Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter von Starkenburg, Shawn R, Larimer, Frank W, Stein, Lisa Y, Klotz, Martin G, Chain, Patrick S.G, Sayavedra-Soto, Luis A, Poret-Peterson, Amisha T, Gentry, Mira E, Arp, Daniel J, Ward, Bess, Bottomley, Peter J

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Whole-genome analysis of the ammonia-oxidizing bacterium, Nitrosomonas eutropha C91: implications for niche adaptation von Stein, Lisa Y, Arp, Daniel J, Berube, Paul M, Chain, Patrick S.G, Hauser, Loren, Jetten, Mike S.M, Klotz, Martin G, Larimer, Frank W, Norton, Jeanette M, Op den Camp, Huub J.M, Shin, Maria, Wei, Xueming

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Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between Morchella with Pseudomonas spp von Cailleau, Guillaume, Hanson, Buck T, Cravero, Melissa, Zhioua, Sami, Hilpish, Patrick, Ruiz, Celia, Robinson, Aaron J, Kelliher, Julia M, Morales, Demosthenes, Gallegos-Graves, La Verne, Bonito, Gregory, Chain, Patrick S G, Bindschedler, Saskia, Junier, Pilar

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Complete Genome Sequence of the Marine, Chemolithoautotrophic, Ammonia-Oxidizing Bacterium Nitrosococcus oceani ATCC 19707 von Klotz, Martin G, Arp, Daniel J, Chain, Patrick S.G, El-Sheikh, Amal F, Hauser, Loren J, Hommes, Norman G, Larimer, Frank W, Malfatti, Stephanie A, Norton, Jeanette M, Poret-Peterson, Amisha T, Vergez, Lisa M, Ward, Bess B

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Identification of mobile genetic elements with geNomad von Camargo, Antonio Pedro, Roux, Simon, Schulz, Frederik, Babinski, Michal, Xu, Yan, Hu, Bin, Chain, Patrick S. G., Nayfach, Stephen, Kyrpides, Nikos C.

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Advances and Challenges in Metatranscriptomic Analysis von Shakya, Migun, Lo, Chien-Chi, Chain, Patrick S. G.

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Rapid evaluation and quality control of next generation sequencing data with FaQCs von Lo, Chien-Chi, Chain, Patrick S G

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Enabling the democratization of the genomics revolution with a fully integrated web-based bioinformatics platform von Li, Po-E, Lo, Chien-Chi, Anderson, Joseph J, Davenport, Karen W, Bishop-Lilly, Kimberly A, Xu, Yan, Ahmed, Sanaa, Feng, Shihai, Mokashi, Vishwesh P, Chain, Patrick S G

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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis von Scholz, Matthew B, Lo, Chien-Chi, Chain, Patrick SG

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