The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes von Passel, M.W.J. van, Kant, R, Zoetendal, E.G, Plugge, C.M, Derrien, M.M.N, Malfatti, S.A, Palva, A, Vos, W.M. de, Smidt, H

Volltext

Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis von Scholz, Matthew B, Lo, Chien-Chi, Chain, Patrick SG

Volltext

Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life von Shakya, Migun, Ahmed, Sanaa A., Davenport, Karen W., Flynn, Mark C., Lo, Chien-Chi, Chain, Patrick S. G.

Volltext

Microbial community adaptation to quaternary ammonium biocides as revealed by metagenomics von Oh, Seungdae, Tandukar, Madan, Pavlostathis, Spyros G., Chain, Patrick S. G., Konstantinidis, Konstantinos T.

Volltext

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill von Mason, Olivia U, Hazen, Terry C, Borglin, Sharon, Chain, Patrick S G, Dubinsky, Eric A, Fortney, Julian L, Han, James, Holman, Hoi-Ying N, Hultman, Jenni, Lamendella, Regina, Mackelprang, Rachel, Malfatti, Stephanie, Tom, Lauren M, Tringe, Susannah G, Woyke, Tanja, Zhou, Jizhong, Rubin, Edward M, Jansson, Janet K

Volltext

Complete Genome Sequence of the Plant Growth-Promoting Endophyte Burkholderia phytofirmans Strain PsJN von WEILHARTER, Alexandra, MITTER, Birgit, SHIN, Maria V, CHAIN, Patrick S. G, NOWAK, Jerzy, SESSITSCH, Angela

Volltext

Ecological roles of dominant and rare prokaryotes in acid mine drainage revealed by metagenomics and metatranscriptomics von Hua, Zheng-Shuang, Han, Yu-Jiao, Chen, Lin-Xing, Liu, Jun, Hu, Min, Li, Sheng-Jin, Kuang, Jia-Liang, Chain, Patrick SG, Huang, Li-Nan, Shu, Wen-Sheng

Volltext

Identification of mobile genetic elements with geNomad von Camargo, Antonio Pedro, Roux, Simon, Schulz, Frederik, Babinski, Michal, Xu, Yan, Hu, Bin, Chain, Patrick S. G., Nayfach, Stephen, Kyrpides, Nikos C.

Volltext

Advances and Challenges in Metatranscriptomic Analysis von Shakya, Migun, Lo, Chien-Chi, Chain, Patrick S. G.

Volltext

The Genome Sequence of the Obligately Chemolithoautotrophic, Facultatively Anaerobic Bacterium Thiobacillus denitrificans von BELLER, Harry R, CHAIN, Patrick S. G, LETAIN, Tracy E, CHAKICHERLA, Anu, LARIMER, Frank W, RICHARDSON, Paul M, COLEMAN, Matthew A, WOOD, Ann P, KELLY, Donovan P

Volltext

Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment von Norton, Jeanette M, Klotz, Martin G, Stein, Lisa Y, Arp, Daniel J, Bottomley, Peter J, Chain, Patrick S.G, Hauser, Loren J, Land, Miriam L, Larimer, Frank W, Shin, Maria W, Starkenburg, Shawn R

Volltext

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres von Swan, Brandon K, Chaffin, Mark D, Martinez-Garcia, Manuel, Morrison, Hilary G, Field, Erin K, Poulton, Nicole J, Masland, E Dashiell P, Harris, Christopher C, Sczyrba, Alexander, Chain, Patrick S G, Koren, Sergey, Woyke, Tanja, Stepanauskas, Ramunas

Volltext

Intrahost SARS-CoV-2 k-mer Identification Method (iSKIM) for Rapid Detection of Mutations of Concern Reveals Emergence of Global Mutation Patterns von Thommana, Ashley, Shakya, Migun, Gandhi, Jaykumar, Fung, Christian K, Chain, Patrick S. G, Maljkovic Berry, Irina, Conte, Matthew A

Volltext

Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella von Foster, Jeffrey T, Beckstrom-Sternberg, Stephen M, Pearson, Talima, Beckstrom-Sternberg, James S, Chain, Patrick S G, Roberto, Francisco F, Hnath, Jonathan, Brettin, Tom, Keim, Paul

Volltext

The impact of genome analyses on our understanding of ammonia-oxidizing bacteria von ARP, Daniel J, CHAIN, Patrick S. G, KLOTZ, Martin G

Volltext

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows von Connor, Ryan, Shakya, Migun, Yarmosh, David A, Maier, Wolfgang, Martin, Ross, Bradford, Rebecca, Brister, J Rodney, Chain, Patrick S G, Copeland, Courtney A, di Iulio, Julia, Hu, Bin, Ebert, Philip, Gunti, Jonathan, Jin, Yumi, Katz, Kenneth S, Kochergin, Andrey, LaRosa, Tré, Li, Jiani, Li, Po-E, Lo, Chien-Chi, Rashid, Sujatha, Maiorova, Evguenia S, Xiao, Chunlin, Zalunin, Vadim, Purcell, Lisa, Pruitt, Kim D

Volltext

Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter von Starkenburg, Shawn R, Larimer, Frank W, Stein, Lisa Y, Klotz, Martin G, Chain, Patrick S.G, Sayavedra-Soto, Luis A, Poret-Peterson, Amisha T, Gentry, Mira E, Arp, Daniel J, Ward, Bess, Bottomley, Peter J

Volltext

Complete Genome Sequence of Yersinia pestis Strains Antiqua and Nepal516: Evidence of Gene Reduction in an Emerging Pathogen von Chain, Patrick S G, Hu, Ping, Malfatti, Stephanie A, Radnedge, Lyndsay, Larimer, Frank, Vergez, Lisa M, Worsham, Patricia, Chu, May C, Andersen, Gary L

Volltext

Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans von Sievert, Stefan M, Scott, Kathleen M, Klotz, Martin G, Chain, Patrick S G, Hauser, Loren J, Hemp, James, Hügler, Michael, Land, Miriam, Lapidus, Alla, Larimer, Frank W, Lucas, Susan, Malfatti, Stephanie A, Meyer, Folker, Paulsen, Ian T, Ren, Qinghu, Simon, Jörg

Volltext

Whole-Genome Analyses of Speciation Events in Pathogenic Brucellae von Chain, Patrick S. G, Comerci, Diego J, Tolmasky, Marcelo E, Larimer, Frank W, Malfatti, Stephanie A, Vergez, Lisa M, Aguero, Fernan, Land, Miriam L, Ugalde, Rodolfo A, Garcia, Emilio

Volltext