An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies von Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, François-Yves, Carré, Isabelle, Château, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Hervé, Piégu, Benoit, Rivals, Eric, Schackwitz, Wendy, Van de Peer, Yves, Piganeau, Gwenaël

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From Sequences to Graphs: Discrete Methods and Structures for Bioinformatics von Chateau, Annie, Salson, Mikaël

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BREC: an R package/Shiny app for automatically identifying heterochromatin boundaries and estimating local recombination rates along chromosomes von Mansour, Yasmine, Chateau, Annie, Fiston-Lavier, Anna-Sophie

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Producing Genomic Sequences after Genome Scaffolding with Ambiguous Paths: Complexity, Approximation and Lower Bounds von Davot, Tom, Chateau, Annie, Giroudeau, Rodolphe, Weller, Mathias, Tabary, Dorine

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On a greedy approach for genome scaffolding von Davot, Tom, Chateau, Annie, Fossé, Rohan, Giroudeau, Rodolphe, Weller, Mathias

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A general framework for genome rearrangement with biological constraints von Simonaitis, Pijus, Chateau, Annie, Swenson, Krister M

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From Sequences to Graphs von Chateau, Annie, Salson, Mikael

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Exact approaches for scaffolding von Weller, Mathias, Chateau, Annie, Giroudeau, Rodolphe

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Efficient assembly consensus algorithms for divergent contig sets von Chateau, Annie, Davot, Tom, Lafond, Manuel

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A complexity and approximation framework for the maximization scaffolding problem von Chateau, A., Giroudeau, R.

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Scaffolding Problems Revisited: Complexity, Approximation and Fixed Parameter Tractable Algorithms, and Some Special Cases von Weller, Mathias, Chateau, Annie, Dallard, Clément, Giroudeau, Rodolphe

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On the Linearization of Scaffolds Sharing Repeated Contigs von Weller, Mathias, Chateau, Annie, Giroudeau, Rodolphe

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Ancestral gene synteny reconstruction improves extant species scaffolding von Anselmetti, Yoann, Berry, Vincent, Chauve, Cedric, Chateau, Annie, Tannier, Eric, Bérard, Sèverine

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A General Framework for Genome Rearrangement with Biological Constraints von Simonaitis, Pijus, Chateau, Annie, Swenson, Krister M.

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RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes von Agret, Clément, Chateau, Annie, Droc, Gaetan, Sarah, Gautier, Ruiz, Manuel, Mancheron, Alban

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Complexity and Polynomial-Time Approximation Algorithms around the Scaffolding Problem von Chateau, Annie, Giroudeau, Rodolphe

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Linearizing Genomes: Exact Methods and Local Search von Davot, Tom, Chateau, Annie, Giroudeau, Rodolphe, Weller, Mathias

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Machine learning meets genome assembly von Padovani de Souza, Kleber, Setubal, João Carlos, Ponce de Leon F. de Carvalho, André Carlos, Oliveira, Guilherme, Chateau, Annie, Alves, Ronnie

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Power Edge Set and Zero Forcing Set Remain Difficult in Cubic Graphs von Cazals, Pierre, Darties, Benoit, Chateau, Annie, Giroudeau, Rodolphe, Weller, Mathias

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Aligning the unalignable: bacteriophage whole genome alignments von Bérard, Sèverine, Chateau, Annie, Pompidor, Nicolas, Guertin, Paul, Bergeron, Anne, Swenson, Krister M

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