SARS-CoV-2 surveillance in Italy through phylogenomic inferences based on Hamming distances derived from pan-SNPs, -MNPs and -InDels von Di Pasquale, Adriano, Radomski, Nicolas, Mangone, Iolanda, Calistri, Paolo, Lorusso, Alessio, Cammà, Cesare

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Harmonization of supervised machine learning practices for efficient source attribution of Listeria monocytogenes based on genomic data von Castelli, Pierluigi, De Ruvo, Andrea, Bucciacchio, Andrea, D'Alterio, Nicola, Cammà, Cesare, Di Pasquale, Adriano, Radomski, Nicolas

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Infection sustained by lineage B.1.1.7 of SARS-CoV-2 is characterised by longer persistence and higher viral RNA loads in nasopharyngeal swabs von Calistri, Paolo, Amato, Laura, Puglia, Ilaria, Cito, Francesca, Di Giuseppe, Alessandra, Danzetta, Maria Luisa, Morelli, Daniela, Di Domenico, Marco, Caporale, Marialuigia, Scialabba, Silvia, Portanti, Ottavio, Curini, Valentina, Perletta, Fabrizia, Cammà, Cesare, Ancora, Massimo, Savini, Giovanni, Migliorati, Giacomo, D’Alterio, Nicola, Lorusso, Alessio

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New Sequence Types and Antimicrobial Drug-Resistant Strains of Streptococcus suis in Diseased Pigs, Italy, 2017-2019 von Cucco, Lucilla, Paniccià, Marta, Massacci, Francesca Romana, Morelli, Alessandra, Ancora, Massimo, Mangone, Iolanda, Di Pasquale, Adriano, Luppi, Andrea, Vio, Denis, Cammà, Cesare, Magistrali, Chiara Francesca

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Possible Human-to-Dog Transmission of SARS-CoV-2, Italy, 2020 von Decaro, Nicola, Vaccari, Gabriele, Lorusso, Alessio, Lorusso, Eleonora, De Sabato, Luca, Patterson, Edward I, Di Bartolo, Ilaria, Hughes, Grant L, Teodori, Liana, Desario, Costantina, Colitti, Barbara, Ricci, Dominga, Buonavoglia, Domenico, Rosati, Sergio, Martella, Vito, Cammà, Cesare, Agrimi, Umberto, Elia, Gabriella

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In vitro and in silico parameters for precise cgMLST typing of Listeria monocytogenes von Palma, Federica, Mangone, Iolanda, Janowicz, Anna, Moura, Alexandra, Chiaverini, Alexandra, Torresi, Marina, Garofolo, Giuliano, Criscuolo, Alexis, Brisse, Sylvain, Di Pasquale, Adriano, Cammà, Cesare, Radomski, Nicolas

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Spatial and temporal dynamics of West Nile virus between Africa and Europe von Mencattelli, Giulia, Ndione, Marie Henriette Dior, Silverj, Andrea, Diagne, Moussa Moise, Curini, Valentina, Teodori, Liana, Di Domenico, Marco, Mbaye, Rassoul, Leone, Alessandra, Marcacci, Maurilia, Gaye, Alioune, Ndiaye, ElHadji, Diallo, Diawo, Ancora, Massimo, Secondini, Barbara, Di Lollo, Valeria, Mangone, Iolanda, Bucciacchio, Andrea, Polci, Andrea, Marini, Giovanni, Rosà, Roberto, Segata, Nicola, Fall, Gamou, Cammà, Cesare, Monaco, Federica, Diallo, Mawlouth, Rota-Stabelli, Omar, Faye, Oumar, Rizzoli, Annapaola, Savini, Giovanni

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Severe Streptococcus equi Subspecies zooepidemicus Outbreak from Unpasteurized Dairy Product Consumption, Italy von Bosica, Serena, Chiaverini, Alexandra, De Angelis, Maria Elisabetta, Petrini, Antonio, Averaimo, Daniela, Martino, Michele, Rulli, Marco, Saletti, Maria Antonietta, Cantelmi, Maria Chiara, Ruggeri, Franco, Lodi, Fabrizio, Calistri, Paolo, Cito, Francesca, Cammà, Cesare, Di Domenico, Marco, Rinaldi, Antonio, Fazii, Paolo, Cedrone, Fabrizio, Di Martino, Giuseppe, Accorsi, Patrizia, Morelli, Daniela, De Luca, Nicola, Pomilio, Francesco, Parruti, Giustino, Savini, Giovanni

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Emergence and Spread of SARS-CoV-2 Lineages B.1.1.7 and P.1 in Italy von Di Giallonardo, Francesca, Puglia, Ilaria, Curini, Valentina, Cammà, Cesare, Mangone, Iolanda, Calistri, Paolo, Cobbin, Joanna C A, Holmes, Edward C, Lorusso, Alessio

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Atypical Serogroup IVb-v1 of Listeria monocytogenes Assigned to New ST2801, Widely Spread and Persistent in the Environment of a Pork-Meat Producing Plant of Central Italy von Guidi, Fabrizia, Lorenzetti, Cinzia, Centorotola, Gabriella, Torresi, Marina, Cammà, Cesare, Chiaverini, Alexandra, Pomilio, Francesco, Blasi, Giuliana

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Genomic Epidemiology of the First Wave of SARS-CoV-2 in Italy von Di Giallonardo, Francesca, Duchene, Sebastian, Puglia, Ilaria, Curini, Valentina, Profeta, Francesca, Cammà, Cesare, Marcacci, Maurilia, Calistri, Paolo, Holmes, Edward C, Lorusso, Alessio

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Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analysis in the Epidemiology of Brucella melitensis Infections von Janowicz, Anna, De Massis, Fabrizio, Ancora, Massimo, Cammà, Cesare, Patavino, Claudio, Battisti, Antonio, Prior, Karola, Harmsen, Dag, Scholz, Holger, Zilli, Katiuscia, Sacchini, Lorena, Di Giannatale, Elisabetta, Garofolo, Giuliano

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Dynamic of SARS-CoV-2 variants circulation in Tunisian pediatric population, during successive waves, from March 2020 to September 2022 von Khemiri, Haifa, Mangone, Iolanda, Gdoura, Mariem, Mefteh, Khawla, Chouikha, Anissa, Fares, Wasfi, Lorusso, Alessio, Ancora, Massimo, Pasquale, Adriano Di, Cammà, Cesare, Halima, Samar Ben, Krichen, Henda, Smaoui, Hanen, Boubaker, Ilhem Boutiba Ben, Bahri, Olfa, Touzi, Henda, Sadraoui, Amel, Meddeb, Zina, Hogga, Nahed, Safer, Mouna, Alaya, Nissaf Ben, Triki, Henda, Haddad-Boubaker, Sondes

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Listeria monocytogenes in ready to eat meat products from Zambia: phenotypical and genomic characterization of isolates von Centorotola, Gabriella, Ziba, Maureen Wakwamba, Cornacchia, Alessandra, Chiaverini, Alexandra, Torresi, Marina, Guidi, Fabrizia, Cammà, Cesare, Bowa, Benson, Mtonga, Samson, Magambwa, Phelly, D’Alterio, Nicola, Scacchia, Massimo, Pomilio, Francesco, Muuka, Geoffrey

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Occurrence and temporal distribution of extended-spectrum β-lactamase-producing Escherichia coli in clams from the Central Adriatic, Italy von Leoni, Francesca, Sacchini, Luca, Pieralisi, Silvia, Angelico, Gabriele, Magistrali, Chiara Francesca, Cucco, Lucilla, Massacci, Francesca Romana, Albini, Elisa, Duranti, Anna, Cammà, Cesare, Secondini, Barbara, Rinaldi, Antonio, Barchiesi, Francesca

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West Nile virus lineage 2 overwintering in Italy von Mencattelli, Giulia, Iapaolo, Federica, Polci, Andrea, Marcacci, Maurilia, Di Gennaro, Annapia, Teodori, Liana, Curini, Valentina, Di Lollo, Valeria, Secondini, Barbara, Scialabba, Silvia, Gobbi, Marco, Manuali, Elisabetta, Cammà, Cesare, Rosà, Roberto, Rizzoli, Annapaola, Monaco, Federica, Savini, Giovanni

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Diagnosis and characterization of canine distemper virus through sequencing by MinION nanopore technology von Peserico, Alessia, Marcacci, Maurilia, Malatesta, Daniela, Di Domenico, Marco, Pratelli, Annamaria, Mangone, Iolanda, D’Alterio, Nicola, Pizzurro, Federica, Cirone, Francesco, Zaccaria, Guendalina, Cammà, Cesare, Lorusso, Alessio

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Multi-approach methods to predict cryptic carbapenem resistance mechanisms in Klebsiella pneumoniae detected in Central Italy von Cornacchia, Alessandra, Janowicz, Anna, Centorotola, Gabriella, Saletti, Maria Antonietta, Ranieri, Sofia Chiatamone, Ancora, Massimo, Ripà, Paola, Cammà, Cesare, Pomilio, Francesco, Chiaverini, Alexandra

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Genomic Characterization of a Wild-Type Bovine alphaherpesvirus 1 (BoAHV-1) Strain Isolated in an Outbreak in Central Italy von Petrini, Stefano, Curini, Valentina, Righi, Cecilia, Cammà, Cesare, Di Lollo, Valeria, Tinelli, Elena, Mincarelli, Luana Fiorella, Rossi, Elisabetta, Costantino, Giulia, Secondini, Barbara, Pirani, Silvia, Giammarioli, Monica, Feliziani, Francesco

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Bifidobacteria in two-toed sloths ( Choloepus didactylus ): phylogenetic characterization of the novel taxon Bifidobacterium choloepi sp. nov von Modesto, Monica, Satti, Maria, Watanabe, Koichi, Huang, Chien-Hsun, Liou, Jong-Shian, Tamura, Tomohiko, Saito, Satomi, Mori, Koji, Huang, Lina, Sandri, Camillo, Spiezio, Caterina, Sgorbati, Barbara, Scarafile, Donatella, Cammà, Cesare, Ancora, Massimo, Patavino, Claudio, Arita, Masanori, Mattarelli, Paola

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