A survey of mapping algorithms in the long-reads era von Sahlin, Kristoffer, Baudeau, Thomas, Cazaux, Bastien, Marchet, Camille

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Algorithms and Complexity on Indexing Founder Graphs von Equi, Massimo, Norri, Tuukka, Alanko, Jarno, Cazaux, Bastien, Tomescu, Alexandru I., Mäkinen, Veli

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Linear time minimum segmentation enables scalable founder reconstruction von Norri, Tuukka, Cazaux, Bastien, Kosolobov, Dmitry, Mäkinen, Veli

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Finding all maximal perfect haplotype blocks in linear time von Alanko, Jarno, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, Stoye, Jens

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Reverse engineering of compact suffix trees and links: A novel algorithm von Cazaux, Bastien, Rivals, Eric

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Hierarchical Overlap Graph von Cazaux, Bastien, Rivals, Eric

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Conway–Bromage–Lyndon (CBL): an exact, dynamic representation of k-mer sets von Martayan, Igor, Cazaux, Bastien, Limasset, Antoine, Marchet, Camille

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Relationship between superstring and compression measures: New insights on the greedy conjecture von Cazaux, Bastien, Rivals, Eric

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Conway–Bromage–Lyndon (CBL): an exact, dynamic representation of k -mer sets von Martayan, Igor, Cazaux, Bastien, Limasset, Antoine, Marchet, Camille

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dipwmsearch: a Python package for searching di-PWM motifs von Mille, Marie, Ripoll, Julie, Cazaux, Bastien, Rivals, Eric

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AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees von Cazaux, Bastien, Castel, Guillaume, Rivals, Eric

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The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings von Cazaux, Bastien, Rivals, Eric

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Read mapping on de Bruijn graphs von Limasset, Antoine, Cazaux, Bastien, Rivals, Eric, Peterlongo, Pierre

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Linking indexing data structures to de Bruijn graphs: Construction and update von Cazaux, Bastien, Lecroq, Thierry, Rivals, Eric

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Founder reconstruction enables scalable and seamless pangenomic analysis von Norri, Tuukka, Cazaux, Bastien, Dönges, Saska, Valenzuela, Daniel, Mäkinen, Veli

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A linear time algorithm for Shortest Cyclic Cover of Strings von Cazaux, Bastien, Rivals, Eric

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A survey of mapping algorithms in the long-reads era von Sahlin, Kristoffer, Baudeau, Thomas, Cazaux, Bastien, Marchet, Camille

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HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets von Kirsch-Gerweck, Benedikt, Bohnenkämper, Leonard, Henrichs, Michel T, Alanko, Jarno N, Bannai, Hideo, Cazaux, Bastien, Peterlongo, Pierre, Burger, Joachim, Stoye, Jens, Diekmann, Yoan

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Superstring Graph: A New Approach for Genome Assembly von Cazaux, Bastien, Sacomoto, Gustavo, Rivals, Eric

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Efficient Construction of Hierarchical Overlap Graphs von Park, Sung Gwan, Cazaux, Bastien, Park, Kunsoo, Rivals, Eric

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