A method for counting PCR template molecules with application to next-generation sequencing von Casbon, James A., Osborne, Robert J., Brenner, Sydney, Lichtenstein, Conrad P.

Volltext

Spectral clustering of protein sequences von Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.

Volltext

Reflex: intramolecular barcoding of long-range PCR products for sequencing multiple pooled DNAs von Casbon, James A, Slatter, Andrew F, Musgrave-Brown, Esther, Osborne, Robert J, Lichtenstein, Conrad P, Brenner, Sydney

Volltext

A high level interface to SCOP and ASTRAL implemented in python von Casbon, James A, Crooks, Gavin E, Saqi, Mansoor A S

Volltext

On single and multiple models of protein families for the detection of remote sequence relationships von Casbon, James A, Saqi, Mansoor A S

Volltext

Analysis of superfamily specific profile-profile recognition accuracy von Casbon, James A, Saqi, Mansoor A S

Volltext

Functional diversity within protein superfamilies von Casbon, James, Saqi, Mansoor

Volltext

Reflex™: a novel method to sequence barcoded long-range PCR products in a pooled population of hundreds of DNA samples von Casbon, James, Slatter, Andrew, Musgrave-Brown, Esther, Osborne, Robert, Lichtenstein, Conrad, Brenner, Sydney

Volltext

Functional diversity within protein superfamilies von Casbon, James, Saqi, Mansoor

Volltext

Mean RMSD values for superfamilies in the dataset von Casbon, James A, Saqi, Mansoor AS

Volltext bestellen

Of the trimmed profiles versus average pairwise RMSD von Casbon, James A, Saqi, Mansoor AS

Volltext bestellen

Mean RMSD of the trimmed profiles versus conservation for superfamilies in our dataset von Casbon, James A, Saqi, Mansoor AS

Volltext bestellen

Of the trimmed profiles versus conservation for superfamilies in our dataset von Casbon, James A, Saqi, Mansoor AS

Volltext bestellen

Values for each superfamily in the dataset for full and trimmed profiles von Casbon, James A, Saqi, Mansoor AS

Volltext bestellen

Clustering results on the 507 dataset with our implementation of GeneRAGE (Top Left), hierarchical clustering (Top Right), TribeMCL (Bottom Left) and our Spectral Clustering algori... von Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.

Volltext bestellen

Plots showing the number of non-singleton domains in Astral-95 that hit a member of the same super-family (red line) or different super-family (green line) beneath a threshold -val... von Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.

Volltext bestellen

The scheme of the method that we used in our experiments von Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.

Volltext bestellen

measure of the cluster quality on the 10 randomly drawn subsets from SCOP von Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.

Volltext bestellen

A UML class diagram of classes involved in the interface to SCOP and ASTRAL von Casbon, James A, Crooks, Gavin E, Saqi, Mansoor AS

Volltext bestellen

Abstract 1768: Multiplexed shRNA cassettes targeting orthogonal pathways (FAS/PTPN2/TGFBR) enhance the potency of integrated circuit T cells (ICTs) in multiple solid tumor models von Gardner, Thomas J., Litterman, Adam, Singh, Brenal K., Silva, Luisa, Hari, Mukund, Zhou, Stanley, Tang, Colin, Joshi, Sahil, Gagnon, John, Takacsi-Nagy, Oliver, Hall, Jason, Pope, Hans, Zhang, James, Gomez, Alma, Chen, Jeremy, Mohanty, Suchismita, Thomas, Vince, Quant, Nicholas, Millare, Beatriz, Casbon, Amy-Jo, Bezman, Natalie, Gray-Rupp, Levi, Boroughs, Angela C., Haining, W. Nicholas

Volltext