A framework for oligonucleotide microarray preprocessing von Carvalho, Benilton S., Irizarry, Rafael A.

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A field guide to cultivating computational biology von Way, Gregory P, Greene, Casey S, Carninci, Piero, Carvalho, Benilton S, de Hoon, Michiel, Finley, Stacey D, Gosline, Sara J C, Lȇ Cao, Kim-Anh, Lee, Jerry S H, Marchionni, Luigi, Robine, Nicolas, Sindi, Suzanne S, Theis, Fabian J, Yang, Jean Y H, Carpenter, Anne E, Fertig, Elana J

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MicroRNA hsa-miR-134 is a circulating biomarker for mesial temporal lobe epilepsy von Avansini, Simoni H, de Sousa Lima, Beatriz Pereira, Secolin, Rodrigo, Santos, Marilza L, Coan, Ana Carolina, Vieira, André S, Torres, Fábio R, Carvalho, Benilton S, Alvim, Marina K M, Morita, Márcia E, Yasuda, Clarissa L, Pimentel-Silva, Luciana R, Dogini, Danyella B, Rogerio, Fabio, Cendes, Fernando, Lopes-Cendes, Iscia

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Dysregulation of NEUROG2 plays a key role in focal cortical dysplasia von Avansini, Simoni H., Torres, Fábio R., Vieira, André S., Dogini, Danyella B., Rogerio, Fabio, Coan, Ana C., Morita, Marcia E., Guerreiro, Marilisa M., Yasuda, Clarissa L., Secolin, Rodrigo, Carvalho, Benilton S., Borges, Murilo G., Almeida, Vanessa S., Araújo, Patrícia A. O. R., Queiroz, Luciano, Cendes, Fernando, Lopes‐Cendes, Iscia

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A Prediction Algorithm for Drug Response in Patients with Mesial Temporal Lobe Epilepsy Based on Clinical and Genetic Information von Silva-Alves, Mariana S, Secolin, Rodrigo, Carvalho, Benilton S, Yasuda, Clarissa L, Bilevicius, Elizabeth, Alvim, Marina K M, Santos, Renato O, Maurer-Morelli, Claudia V, Cendes, Fernando, Lopes-Cendes, Iscia

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Methodological differences can affect sequencing depth with a possible impact on the accuracy of genetic diagnosis von Borges, Murilo G, Rocha, Cristiane S, Carvalho, Benilton S, Lopes-Cendes, Iscia

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Multimodal Analysis of SCN1A Missense Variants Improves Interpretation of Clinically Relevant Variants in Dravet Syndrome von Gonsales, Marina C, Montenegro, Maria Augusta, Preto, Paula, Guerreiro, Marilisa M, Coan, Ana Carolina, Quast, Monica Paiva, Carvalho, Benilton S, Lopes-Cendes, Iscia

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Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer von Kim, Jaegil, Bellmunt, Joaquim, Cherniack, Andrew D., Hinoue, Toshinori, Hoadley, Katherine A., Gibb, Ewan A., Shukla, Sachet A., Sanchez-Vega, Francisco, Reuter, Victor E., Sadeghi, Sara, Pedamallu, Chandra Sekhar, Lu, Yiling, Klimczak, Leszek J., Zhang, Jiexin, Choo, Caleb, Leraas, Kristen M., Lichtenberg, Tara M., Schultz, Nicholaus, Getz, Gad, Mills, Gordon B., Al-Ahmadie, Hikmat, Alexopoulou, Iakovina, Ally, Adrian, Beaver, Allison, Bellmunt, Joaquim, Boice, Lori, Bootwalla, Moiz S., Bowen, Jay, Brooks, Denise, Broom, Bradley M., Bshara, Wiam, Bullman, Susan, Burks, Eric, Carvalho, Benilton S., Carvalho, Andre L., Castro, Mauro A.A., Chagas, Vinicius S., Cherniack, Andrew D., Cortessis, Victoria K., Czerniak, Bogdan A., Daneshmand, Siamak, Dhalla, Noreen, Egea, Sophie C., Engel, Jay, Felau, Ina, Gastier-Foster, Julie M., Getz, Gad, Gordenin, Dmitry A., Hansel, Donna E., Harr, Jodi, Hartmann, Arndt, Hinoue, Toshinori, Jones, Steven J.M., Kahnoski, Richard J., Kasaian, Katayoon, Lai, Phillip H., Lane, Brian R., Liu, Jia, Lolla, Laxmi, Lotan, Yair, Lu, Yiling, Lucchesi, Fabiano R., Mallery, David, Marra, Marco A., Mills, Gordon B., Mungall, Karen L., Ojesina, Akinyemi I., Parekh, Dipen J., Sekhar Pedamallu, Chandra, Pihl, Todd, Rathmell, W. Kimryn, Robertson, A. Gordon, Sadeghi, Sara, Saller, Charles, Salner, Andrew, Sanchez-Vega, Francisco, Scapulatempo-Neto, Cristovam, Schuckman, Anne K., Shukla, Sachet A., Simko, Jeff, Sipahimalani, Payal, Sorcini, Andrea, Stoehr, Robert, Su, Xiaoping, Tarnuzzer, Roy, Thiessen, Nina, Thorne, Leigh, Tse, Kane, Wach, Sven, Wang, Zhining, Weinstein, John N., Wise, Lisa, Wong, Tina, Wu, Ye, Zach, Leigh Anne, Zenklusen, Jean C., Zhang, Jiashan (Julia), Zhang, Jiexin, Zwarthoff, Ellen C., Weinstein, John N.

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Orchestrating high-throughput genomic analysis with Bioconductor von Huber, Wolfgang, Carey, Vincent J, Gentleman, Robert, Anders, Simon, Carlson, Marc, Carvalho, Benilton S, Bravo, Hector Corrada, Davis, Sean, Gatto, Laurent, Girke, Thomas, Gottardo, Raphael, Hahne, Florian, Hansen, Kasper D, Irizarry, Rafael A, Lawrence, Michael, Love, Michael I, MacDonald, James, Obenchain, Valerie, Oleś, Andrzej K, Pagès, Hervé, Reyes, Alejandro, Shannon, Paul, Smyth, Gordon K, Tenenbaum, Dan, Waldron, Levi, Morgan, Martin

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Copy number alterations associated with clinical features in an underrepresented population with breast cancer von Rodrigues‐Peres, Raquel M., Carvalho, Benilton, Anurag, Meenakshi, Lei, Jonathan T., Conz, Livia, Gonçalves, Rodrigo, Cardoso Filho, Cássio, Ramalho, Susana, Paiva, Geisilene R., Derchain, Sophie F. M., Lopes‐Cendes, Iscia, Ellis, Matthew J., Sarian, Luis O.

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Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips von Ritchie, Matthew E, Liu, Ruijie, Carvalho, Benilton S, Irizarry, Rafael A

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Benchmarking the proteomic profile of animal models of mesial temporal epilepsy von Canto, Amanda M., Godoi, Alexandre B., Matos, Alexandre H. B., Geraldis, Jaqueline C., Rogerio, Fabio, Alvim, Marina K. M., Yasuda, Clarissa L., Ghizoni, Enrico, Tedeschi, Helder, Veiga, Diogo F. T., Henning, Barbara, Souza, Welliton, Rocha, Cristiane S., Vieira, André S., Dias, Elayne V., Carvalho, Benilton S., Gilioli, Rovilson, Arul, Albert B., Robinson, Renã A. S., Cendes, Fernando, Lopes‐Cendes, Iscia

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Working with Oligonucleotide Arrays von Carvalho, Benilton S.

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Blood plasma proteomic modulation induced by olanzapine and risperidone in schizophrenia patients von Garcia-Rosa, Sheila, Carvalho, Benilton S., Guest, Paul C., Steiner, Johann, Martins-de-Souza, Daniel

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Distribution of local ancestry and evidence of adaptation in admixed populations von Secolin, Rodrigo, Mas-Sandoval, Alex, Arauna, Lara R., Torres, Fábio R., de Araujo, Tânia K., Santos, Marilza L., Rocha, Cristiane S., Carvalho, Benilton S., Cendes, Fernando, Lopes-Cendes, Iscia, Comas, David

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Multi‐omics analysis suggests enhanced epileptogenesis in the Cornu Ammonis 3 of the pilocarpine model of mesial temporal lobe epilepsy von Canto, Amanda M., Matos, Alexandre H. B., Godoi, Alexandre B., Vieira, André S., Aoyama, Beatriz B., Rocha, Cristiane S., Henning, Barbara, Carvalho, Benilton S., Pascoal, Vinicius D.B., Veiga, Diogo F. T., Gilioli, Rovilson, Cendes, Fernando, Lopes‐Cendes, Iscia

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Plasma proteomic signature of major depressive episode in the elderly von Silva-Costa, Licia C., Smith, Bradley J., Carregari, Victor Corasolla, Souza, Gustavo H.M.F., Vieira, Erica M., Mendes-Silva, Ana Paula, de Almeida, Valéria, Carvalho, Benilton S., Diniz, Breno S., Martins-de-Souza, Daniel

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A mesomelic skeletal dysplasia, Kantaputra‐like, not related to HOXD cluster region, and with phenotypic gender differences von Lacarrubba‐Flores, Maria Dora Jazmin, Costa Silveira, Karina, Silveira, Cynthia, Carvalho, Benilton S., Cavalcanti, Denise Pontes

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Laser microdissection-based microproteomics of the hippocampus of a rat epilepsy model reveals regional differences in protein abundances von do Canto, Amanda M., Vieira, André S., H.B. Matos, Alexandre, Carvalho, Benilton S., Henning, Barbara, Norwood, Braxton A., Bauer, Sebastian, Rosenow, Felix, Gilioli, Rovilson, Cendes, Fernando, Lopes-Cendes, Iscia

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Quantifying uncertainty in genotype calls von Carvalho, Benilton S., Louis, Thomas A., Irizarry, Rafael A.

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