CellProfiler 3.0: Next-generation image processing for biology von McQuin, Claire, Goodman, Allen, Chernyshev, Vasiliy, Kamentsky, Lee, Cimini, Beth A, Karhohs, Kyle W, Doan, Minh, Ding, Liya, Rafelski, Susanne M, Thirstrup, Derek, Wiegraebe, Winfried, Singh, Shantanu, Becker, Tim, Caicedo, Juan C, Carpenter, Anne E

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CellProfiler 4: improvements in speed, utility and usability von Stirling, David R, Swain-Bowden, Madison J, Lucas, Alice M, Carpenter, Anne E, Cimini, Beth A, Goodman, Allen

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Liver‐on‐a‐Chip Models of Fatty Liver Disease von Hassan, Shabir, Sebastian, Shikha, Maharjan, Sushila, Lesha, Ami, Carpenter, Anne‐Marie, Liu, Xiuli, Xie, Xin, Livermore, Carol, Zhang, Yu Shrike, Zarrinpar, Ali

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Image-based profiling for drug discovery: due for a machine-learning upgrade? von Chandrasekaran, Srinivas Niranj, Ceulemans, Hugo, Boyd, Justin D., Carpenter, Anne E.

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mTOR Complex 1 Regulates Lipin 1 Localization to Control the SREBP Pathway von Peterson, Timothy R., Sengupta, Shomit S., Harris, Thurl E., Carmack, Anne E., Kang, Seong A., Balderas, Eric, Guertin, David A., Madden, Katherine L., Carpenter, Anne E., Finck, Brian N., Sabatini, David M.

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CellProfiler Analyst 3.0: accessible data exploration and machine learning for image analysis von Stirling, David R, Carpenter, Anne E, Cimini, Beth A

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Annotated high-throughput microscopy image sets for validation von Ljosa, Vebjorn, Sokolnicki, Katherine L, Carpenter, Anne E

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Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes von Bray, Mark-Anthony, Singh, Shantanu, Han, Han, Davis, Chadwick T, Borgeson, Blake, Hartland, Cathy, Kost-Alimova, Maria, Gustafsdottir, Sigrun M, Gibson, Christopher C, Carpenter, Anne E

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Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl von Caicedo, Juan C., Goodman, Allen, Karhohs, Kyle W., Cimini, Beth A., Ackerman, Jeanelle, Haghighi, Marzieh, Heng, CherKeng, Becker, Tim, Doan, Minh, McQuin, Claire, Rohban, Mohammad, Singh, Shantanu, Carpenter, Anne E.

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Applications in image-based profiling of perturbations von Caicedo, Juan C, Singh, Shantanu, Carpenter, Anne E

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Bringing computation to biology by bridging the last mile von Carpenter, Anne E., Singh, Shantanu

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Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic von Chow, Yuen Ler, Singh, Shantanu, Carpenter, Anne E, Way, Gregory P

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CellProfiler Analyst: data exploration and analysis software for complex image-based screens von Jones, Thouis R, Kang, In Han, Wheeler, Douglas B, Lindquist, Robert A, Papallo, Adam, Sabatini, David M, Golland, Polina, Carpenter, Anne E

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Diagnostic Potential of Imaging Flow Cytometry von Doan, Minh, Vorobjev, Ivan, Rees, Paul, Filby, Andrew, Wolkenhauer, Olaf, Goldfeld, Anne E., Lieberman, Judy, Barteneva, Natasha, Carpenter, Anne E., Hennig, Holger

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Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images von Caicedo, Juan C., Roth, Jonathan, Goodman, Allen, Becker, Tim, Karhohs, Kyle W., Broisin, Matthieu, Molnar, Csaba, McQuin, Claire, Singh, Shantanu, Theis, Fabian J., Carpenter, Anne E.

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A well-engineered path into cell biology and academia von Carpenter, Anne E

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Increasing the Content of High-Content Screening: An Overview von Singh, Shantanu, Carpenter, Anne E., Genovesio, Auguste

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Why I shrank my lab by half von Carpenter, Anne E

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Reconstructing cell cycle and disease progression using deep learning von Eulenberg, Philipp, Köhler, Niklas, Blasi, Thomas, Filby, Andrew, Carpenter, Anne E., Rees, Paul, Theis, Fabian J., Wolf, F. Alexander

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A Microscale Human Liver Platform that Supports the Hepatic Stages of Plasmodium falciparum and vivax von March, Sandra, Ng, Shengyong, Velmurugan, Soundarapandian, Galstian, Ani, Shan, Jing, Logan, David J., Carpenter, Anne E., Thomas, David, Sim, B. Kim Lee, Mota, Maria M., Hoffman, Stephen L., Bhatia, Sangeeta N.

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