Microglia and macrophages promote corralling, wound compaction and recovery after spinal cord injury via Plexin-B2 von Zhou, Xiang, Wahane, Shalaka, Friedl, Marie-Sophie, Kluge, Michael, Friedel, Caroline C., Avrampou, Kleopatra, Zachariou, Venetia, Guo, Lei, Zhang, Bin, He, Xijing, Friedel, Roland H., Zou, Hongyan

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Widespread disruption of host transcription termination in HSV-1 infection von Rutkowski, Andrzej J., Erhard, Florian, L’Hernault, Anne, Bonfert, Thomas, Schilhabel, Markus, Crump, Colin, Rosenstiel, Philip, Efstathiou, Stacey, Zimmer, Ralf, Friedel, Caroline C., Dölken, Lars

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A comprehensive evaluation of alignment algorithms in the context of RNA-seq von Lindner, Robert, Friedel, Caroline C

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HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes von Hennig, Thomas, Michalski, Marco, Rutkowski, Andrzej J, Djakovic, Lara, Whisnant, Adam W, Friedl, Marie-Sophie, Jha, Bhaskar Anand, Baptista, Marisa A P, L'Hernault, Anne, Erhard, Florian, Dölken, Lars, Friedel, Caroline C

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Quantitative proteomics of the integrin adhesome show a myosin II-dependent recruitment of LIM domain proteins von Schiller, Herbert B, Friedel, Caroline C, Boulegue, Cyril, Fässler, Reinhard

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Watchdog - a workflow management system for the distributed analysis of large-scale experimental data von Kluge, Michael, Friedel, Caroline C

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Prediction of Poly(A) Sites by Poly(A) Read Mapping von Bonfert, Thomas, Friedel, Caroline C

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P-TEFb Activation by RBM7 Shapes a Pro-survival Transcriptional Response to Genotoxic Stress von Bugai, Andrii, Quaresma, Alexandre J.C., Friedel, Caroline C., Lenasi, Tina, Düster, Robert, Sibley, Christopher R., Fujinaga, Koh, Kukanja, Petra, Hennig, Thomas, Blasius, Melanie, Geyer, Matthias, Ule, Jernej, Dölken, Lars, Barborič, Matjaž

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Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27 von Wang, Xiuye, Hennig, Thomas, Whisnant, Adam W., Erhard, Florian, Prusty, Bhupesh K., Friedel, Caroline C., Forouzmand, Elmira, Hu, William, Erber, Luke, Chen, Yue, Sandri-Goldin, Rozanne M., Dölken, Lars, Shi, Yongsheng

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HSV-1 and influenza infection induce linear and circular splicing of the long NEAT1 isoform von Friedl, Marie-Sophie, Djakovic, Lara, Kluge, Michael, Hennig, Thomas, Whisnant, Adam W, Backes, Simone, Dölken, Lars, Friedel, Caroline C

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HSV-1 Infection Induces a Downstream Shift of Promoter-Proximal Pausing for Host Genes von Weiß, Elena, Hennig, Thomas, Graßl, Pilar, Djakovic, Lara, Whisnant, Adam W, Jürges, Christopher S, Koller, Franziska, Kluge, Michael, Erhard, Florian, Dölken, Lars, Friedel, Caroline C

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Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation von Wang, Xiuye, Liu, Liang, Whisnant, Adam W, Hennig, Thomas, Djakovic, Lara, Haque, Nabila, Bach, Cindy, Sandri-Goldin, Rozanne M, Erhard, Florian, Friedel, Caroline C, Dölken, Lars, Shi, Yongsheng

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Virus–host interactomes and global models of virus-infected cells von Friedel, Caroline C, Haas, Jürgen

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High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay von Dölken, Lars, Ruzsics, Zsolt, Rädle, Bernd, Friedel, Caroline C, Zimmer, Ralf, Mages, Jörg, Hoffmann, Reinhard, Dickinson, Paul, Forster, Thorsten, Ghazal, Peter, Koszinowski, Ulrich H

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ContextMap 2: fast and accurate context-based RNA-seq mapping von Bonfert, Thomas, Kirner, Evelyn, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C

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Decoding murine cytomegalovirus von Lodha, Manivel, Muchsin, Ihsan, Jürges, Christopher, Juranic Lisnic, Vanda, L'Hernault, Anne, Rutkowski, Andrzej J, Prusty, Bhupesh K, Grothey, Arnhild, Milic, Andrea, Hennig, Thomas, Jonjic, Stipan, Friedel, Caroline C, Erhard, Florian, Dölken, Lars

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Dissecting Herpes Simplex Virus 1-Induced Host Shutoff at the RNA Level von Friedel, Caroline C, Whisnant, Adam W, Djakovic, Lara, Rutkowski, Andrzej J, Friedl, Marie-Sophie, Kluge, Michael, Williamson, James C, Sai, Somesh, Vidal, Ramon Oliveira, Sauer, Sascha, Hennig, Thomas, Grothey, Arnhild, Milić, Andrea, Prusty, Bhupesh K, Lehner, Paul J, Matheson, Nicholas J, Erhard, Florian, Dölken, Lars

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Calpain-mediated cleavage of collapsin response mediator protein-2 drives acute axonal degeneration von Zhang, Jian-Nan, Michel, Uwe, Lenz, Christof, Friedel, Caroline C., Köster, Sarah, d’Hedouville, Zara, Tönges, Lars, Urlaub, Henning, Bähr, Mathias, Lingor, Paul, Koch, Jan C.

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Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution von Windhager, Lukas, Bonfert, Thomas, Burger, Kaspar, Ruzsics, Zsolt, Krebs, Stefan, Kaufmann, Stefanie, Malterer, Georg, L'Hernault, Anne, Schilhabel, Markus, Schreiber, Stefan, Rosenstiel, Philip, Zimmer, Ralf, Eick, Dirk, Friedel, Caroline C, Dölken, Lars

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Evolutionarily conserved herpesviral protein interaction networks von Fossum, Even, Friedel, Caroline C, Rajagopala, Seesandra V, Titz, Björn, Baiker, Armin, Schmidt, Tina, Kraus, Theo, Stellberger, Thorsten, Rutenberg, Christiane, Suthram, Silpa, Bandyopadhyay, Sourav, Rose, Dietlind, von Brunn, Albrecht, Uhlmann, Mareike, Zeretzke, Christine, Dong, Yu-An, Boulet, Hélène, Koegl, Manfred, Bailer, Susanne M, Koszinowski, Ulrich, Ideker, Trey, Uetz, Peter, Zimmer, Ralf, Haas, Jürgen

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