Metagenomic sequencing in clinical virology: advances in pathogen detection and future prospects von Carbo, E.C.

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Effectiveness of whole-exome sequencing and costs of the traditional diagnostic trajectory in children with intellectual disability von Monroe, G.R, Frederix, G.W.J, Savelberg, S.M, de Vries, T.I, Duran, K.J, van der Smagt, J.J, Terhal, P.A, van Hasselt, P.M, Kroes, H.Y, Verhoeven - Duif, N.M, Nijman, I.J, Carbo, E.C, van Gassen, K.L.I, Knoers, N.V, Hövels, A.M, van Haelst, M.M, Visser, G, Van Haaften, G

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Viral metagenomic sequencing in the diagnosis of meningoencephalitis: a review of technical advances and diagnostic yield von Carbo, E.C., Blankenspoor, I., Goeman, J.J., Kroes, A.C.M., Claas, E.C.J., Vries, J.J.C. de

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Longitudinal monitoring of DNA viral loads in transplant patients using quantitative metagenomic next-generation sequencing von Carbo, E.C., Russcher, A., Kraakman, M.E.M., Brouwer, C.S. de, Sidorov, I.A., Feltkamp, M.C.W., Kroes, A.C.M., Claas, E.C.J., Vries, J.J.C. de

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Viral metagenomic sequencing in a cohort of international travellers returning with febrile illness von Reyes, A., Carbo, E.C., Slooten, J.S.V.T., Kraakman, M.E.M., Sidorov, I.A., Claas, E.C.J., Kroes, A.C.M., Visser, L.G., , J.J.C.V. de

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Coronavirus discovery by metagenomic sequencing: a tool for pandemic preparedness von Carbo, E.C., Sidorov, I.A., Zevenhoven-Dobbe, J.C., Snijder, E.J., Claas, E.C., Laros, J.F.J., Kroes, A.C.M., Vries, J.J.C. de

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A comparison of five Illumina, Ion Torrent, and nanopore sequencing technology-based approaches for whole genome sequencing of SARS-CoV-2 von Carbo, E.C., Mourik, K., Boers, S.A., Munnink, B.O., Nieuwenhuijse, D., Jonges, M., Welkers, M.R.A., Matamoros, S., Slooten, J.V.T., Kraakman, M.E.M., Karelioti, E., Meer, D. van der, Veldkamp, K.E., Kroes, A.C.M., Sidorov, I., Vries, J.J.C. de

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Performance of five metagenomic classifiers for virus pathogen detection using respiratory samples from a clinical cohort von Carbo, E.C., Sidorov, I.A., Rijn-Klink, A.L. van, Pappas, N., Boheemen, S. van, Mei, H.L., Hiemstra, P.S., Eagan, T.M., Claas, E.C.J., Kroes, A.C.M., Vries, J.J.C. de

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Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics von Carbo, E.C., Buddingh, E.P., Karelioti, E., Sidorov, I.A., Feltkamp, M.C.W., Borne, P.A. von dem, Verschuuren, J.J.G.M., Kroes, A.C.M., Claas, E.C.J., Vries, J.J.C. de

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Retrospective validation of a metagenomic sequencing protocol for combined detection of RNA and DNA viruses using respiratory samples from pediatric patients von Boheemen, S. van, Rijn, A.L. van, Pappas, N., Carbo, E.C., Vorderman, R.H.P., Sidorov, I., van't Hof, P.J., Mei, H.L., Claas, E.C.J., Kroes, A.C.M., Vries, J.J.C. de

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STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies von Bharucha, T., Oeser, C., Balloux, F., Brown, J.R., Carbo, E.C., Charlett, A., Chiu, C.Y., Claas, E.C.J., Goffau, M.C. de, Vries, J.J.C. de, Eloit, M., Hopkins, S., Huggett, J.F., MacCannell, D., Morfopoulou, S., Nath, A., O'Sullivan, D.M., Reoma, L.B., Shaw, L.P., Sidorov, I., Simner, P.J., Tan, L., Thomson, E.C., Dorp, L. van, Wilson, M.R., Breuer, J., Field, N.

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Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting von Vries, J.J.C. de, Brown, J.R., Couto, N., Beer, M., Mercier, P. le, Sidorov, I., Papa, A., Fischer, N., Munnink, B.B.O., Rodriquez, C., Zaheri, M., Sayiner, A., Honemann, M., Cataluna, A.P., Carbo, E.C., Bachofen, C., Kubacki, J., Schmitz, D., Tsioka, K., Matamoros, S., Hoper, D., Hernandez, M., Puchhammer-Stockl, E., Lebrand, A., Huber, M., Simmonds, P., Claas, E.C.J., Lopez-Labrador, F.X.

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