Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials von Herreros, D., Lederman, R. R., Krieger, J. M., Jiménez-Moreno, A., Martínez, M., Myška, D., Strelak, D., Filipovic, J., Sorzano, C. O. S., Carazo, J. M.

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Two-step demodulation based on the Gram-Schmidt orthonormalization method von Vargas, J, Quiroga, J Antonio, Sorzano, C O S, Estrada, J C, Carazo, J M

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Nonsmooth nonnegative matrix factorization (nsNMF) von Pascual-Montano, A., Carazo, J.M., Kochi, K., Lehmann, D., Pascual-Marqui, R.D.

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Two-step interferometry by a regularized optical flow algorithm von VARGAS, J, ANTONIO QUIROGA, J, SORZANO, C. O. S, ESTRADA, J. C, CARAZO, J. M

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Integration of Cryo-EM Model Building Software in Scipion von Martínez, M, Jiménez-Moreno, A, Maluenda, D, Ramírez-Aportela, E, Melero, R, Cuervo, A, Conesa, P, del Caño, L, Fonseca, Y. C, Sánchez-García, R, Strelak, D, Conesa, J. J, Fernández-Giménez, E, de Isidro, F, Sorzano, C. O. S, Carazo, J. M, Marabini, R

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Local resolution estimates of cryoEM reconstructions von Vilas, JL, Heymann, JB, Tagare, HD, Ramirez-Aportela, E, Carazo, JM, Sorzano, COS

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Image processing tools for the validation of CryoEM maps von Sorzano, C. O. S, Vilas, J. L, Ramírez-Aportela, E, Krieger, J, del Hoyo, D, Herreros, D, Fernandez-Giménez, E, Marchán, D, Macías, J. R, Sánchez, I, del Caño, L, Fonseca-Reyna, Y, Conesa, P, García-Mena, A, Burguet, J, García Condado, J, Méndez García, J, Martínez, M, Muñoz-Barrutia, A, Marabini, R, Vargas, J, Carazo, J. M

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XMIPP: a new generation of an open-source image processing package for electron microscopy von Sorzano, C.O.S., Marabini, R., Velázquez-Muriel, J., Bilbao-Castro, J.R., Scheres, S.H.W., Carazo, J.M., Pascual-Montano, A.

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Quantitative analysis of 3D alignment quality: its impact on soft-validation, particle pruning and homogeneity analysis von Vargas, J., Melero, R., Gómez-Blanco, J., Carazo, J. M., Sorzano, C. O. S.

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Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy von de la Rosa-Trevín, J.M., Quintana, A., del Cano, L., Zaldívar, A., Foche, I., Gutiérrez, J., Gómez-Blanco, J., Burguet-Castell, J., Cuenca-Alba, J., Abrishami, V., Vargas, J., Otón, J., Sharov, G., Vilas, J.L., Navas, J., Conesa, P., Kazemi, M., Marabini, R., Sorzano, C.O.S., Carazo, J.M.

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A Survey of the Use of Iterative Reconstruction Algorithms in Electron Microscopy von Conesa, P., Gómez-Blanco, J., Marabini, R., Carazo, J. M., del Caño, L., Melero, R., Kazemi, M., Vilas, J. L., de la Rosa-Trevín, J. M., Otón, J., Vargas, Javier, Sorzano, Carlos Oscar S., Cuenca, J.

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BIPSPI: a method for the prediction of partner-specific protein–protein interfaces von Sanchez-Garcia, Ruben, Sorzano, C O S, Carazo, J M, Segura, Joan

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MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning von Sanchez-Garcia, Ruben, Segura, Joan, Maluenda, David, Sorzano, C.O.S., Carazo, J.M.

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Local defocus estimation in single particle analysis in cryo-electron microscopy von Fernandez-Gimenez, E., Carazo, J.M., Sorzano, C.O.S.

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Cryo-Electron Microscopy: The field of 1,000+ methods von Sorzano, C.O.S., Carazo, J.M.

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BIPSPI+: Mining Type-Specific Datasets of Protein Complexes to Improve Protein Binding Site Prediction von Sanchez-Garcia, R., Macias, J.R., Sorzano, C.O.S., Carazo, J.M., Segura, J.

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ZART: A Novel Multiresolution Reconstruction Algorithm with Motion-blur Correction for Single Particle Analysis von Herreros, D., Kiska, J., Ramírez-Aportela, E., Filipovic, J., Carazo, J.M., Sorzano, C.O.S.

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A new algorithm for particle weighted subtraction to decrease signals from unwanted components in single particle analysis von Fernández-Giménez, E., Martínez, M.M., Marabini, R., Strelak, D., Sánchez-García, R., Carazo, J.M., Sorzano, C.O.S.

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A deep learning approach to the automatic detection of alignment errors in cryo-electron tomographic reconstructions von de Isidro-Gómez, F.P., Vilas, J.L., Losana, P., Carazo, J.M., Sorzano, C.O.S.

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Generalization of the Principal Component Analysis algorithm for interferometry von Vargas, J., Sorzano, C.O.S., Estrada, J.C., Carazo, J.M.

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