R2DT is a framework for predicting and visualising RNA secondary structure using templates von Sweeney, Blake A., Hoksza, David, Nawrocki, Eric P., Ribas, Carlos Eduardo, Madeira, Fábio, Cannone, Jamie J., Gutell, Robin, Maddala, Aparna, Meade, Caeden D., Williams, Loren Dean, Petrov, Anton S., Chan, Patricia P., Lowe, Todd M., Finn, Robert D., Petrov, Anton I.

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The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum von Feagin, Jean E, Harrell, Maria Isabel, Lee, Jung C, Coe, Kevin J, Sands, Bryan H, Cannone, Jamie J, Tami, Germaine, Schnare, Murray N, Gutell, Robin R

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs von Cannone, Jamie J, Subramanian, Sankar, Schnare, Murray N, Collett, James R, D'Souza, Lisa M, Du, Yushi, Feng, Brian, Lin, Nan, Madabusi, Lakshmi V, Müller, Kirsten M, Pande, Nupur, Shang, Zhidi, Yu, Nan, Gutell, Robin R

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Specificity between Lactobacilli and Hymenopteran Hosts Is the Exception Rather than the Rule von MCFREDERICK, Quinn S, CANNONE, Jamie J, GUTELL, Robin R, KELLNER, Katrin, PLOWES, Robert M, MUELLER, Ulrich G

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Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction von Doshi, Kishore J, Cannone, Jamie J, Cobaugh, Christian W, Gutell, Robin R

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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases von Sweeney, Blake A., Petrov, Anton, Ribas, Carlos E., Finn, Robert D., Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M., Seemann, Stefan E., Gorodkin, Jan, Cannone, Jamie J., Gutell, Robin R., Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M., Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P., Lowe, Todd M., Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G., Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J., Kalvari, Ioanna, Nawrocki, Eric P., Petrov, Anton S., Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M., Hoksza, David, Lovering, Ruth C., Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha

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RNAcentral: a hub of information for non-coding RNA sequences von Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

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Structure of the Mammalian 80S Ribosome at 8.7 Å Resolution von Chandramouli, Preethi, Topf, Maya, Ménétret, Jean-François, Eswar, Narayanan, Cannone, Jamie J., Gutell, Robin R., Sali, Andrej, Akey, Christopher W.

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Supersized Ribosomal RNA Expansion Segments in Asgard Archaea von Penev, Petar I, Fakhretaha-Aval, Sara, Patel, Vaishnavi J, Cannone, Jamie J, Gutell, Robin R, Petrov, Anton S, Williams, Loren Dean, Glass, Jennifer B

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The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction von Cannone, Jamie, Subramanian, Sankar, Schnare, Murray, Collett, James, D'Souza, Lisa, Du, Yushi, Feng, Brian, Lin, Nan, Madabusi, Lakshmi, Müller, Kirsten, Pande, Nupur, Shang, Zhidi, Yu, Nan, Gutell, Robin

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The accuracy of ribosomal RNA comparative structure models von Gutell, Robin R, Lee, Jung C, Cannone, Jamie J

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Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae) von Maddison, David R., Moore, Wendy, Baker, Michael D., Ellis, Tana M., Ober, Karen A., Cannone, Jamie J, Gutell, Robin R.

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Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes von Milbury, Coren A, Lee, Jung C, Cannone, Jamie J, Gaffney, Patrick M, Gutell, Robin R

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R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server von Cannone, Jamie J, Sweeney, Blake A, Petrov, Anton I, Gutell, Robin R, Zirbel, Craig L, Leontis, Neocles

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ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae von Goertzen, Leslie R., Cannone, Jamie J., Gutell, Robin R., Jansen, Robert K.

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Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems von Shang, Lei, Gardner, David P, Xu, Weijia, Cannone, Jamie J, Miranker, Daniel P, Ozer, Stuart, Gutell, Robin R

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Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes von Qui, Y.L, Dombrovska, O, Lee, J, Li, L, Whitlock, B.A, Bernasconi-Quadroni, F, Rest, J.S, Davis, C.C, Borsch, T, Hilu, K.W

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Modeling a Minimal Ribosome Based on Comparative Sequence Analysis von Mears, Jason A., Cannone, Jamie J., Stagg, Scott M., Gutell, Robin R., Agrawal, Rajendra K., Harvey, Stephen C.

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THE EVOLUTION OF ELONGATE SHAPE IN DIATOMS von Alverson, Andrew J., Cannone, Jamie J., Gutell, Robin R., Theriot, Edward C.

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RNAcentral: a hub of information for non-coding RNA sequences von Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

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