Comprehensive analysis of the chromatin landscape in Drosophila von Kharchenko, Peter V., Alekseyenko, Artyom A., Schwartz, Yuri B., Minoda, Aki, Riddle, Nicole C., Ernst, Jason, Sabo, Peter J., Larschan, Erica, Gorchakov, Andrey A., Gu, Tingting, Linder-Basso, Daniela, Plachetka, Annette, Shanower, Gregory, Tolstorukov, Michael Y., Luquette, Lovelace J., Xi, Ruibin, Jung, Youngsook L., Park, Richard W., Bishop, Eric P., Canfield, Theresa P., Sandstrom, Richard, Thurman, Robert E., MacAlpine, David M., Stamatoyannopoulos, John A., Kellis, Manolis, Elgin, Sarah C. R., Kuroda, Mitzi I., Pirrotta, Vincenzo, Karpen, Gary H., Park, Peter J.

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Topologically associating domains are stable units of replication-timing regulation von Pope, Benjamin D., Ryba, Tyrone, Dileep, Vishnu, Yue, Feng, Wu, Weisheng, Denas, Olgert, Vera, Daniel L., Wang, Yanli, Hansen, R. Scott, Canfield, Theresa K., Thurman, Robert E., Cheng, Yong, Gülsoy, Günhan, Dennis, Jonathan H., Snyder, Michael P., Stamatoyannopoulos, John A., Taylor, James, Hardison, Ross C., Kahveci, Tamer, Ren, Bing, Gilbert, David M.

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Systematic Localization of Common Disease-Associated Variation in Regulatory DNA von Maurano, Matthew T., Humbert, Richard, Rynes, Eric, Thurman, Robert E., Haugen, Eric, Wang, Hao, Reynolds, Alex P., Sandstrom, Richard, Qu, Hongzhu, Brody, Jennifer, Shafer, Anthony, Neri, Fidencio, Lee, Kristen, Kutyavin, Tanya, Stehling-Sun, Sandra, Johnson, Audra K., Canfield, Theresa K., Giste, Erika, Diegel, Morgan, Bates, Daniel, Hansen, R. Scott, Neph, Shane, Sabo, Peter J., Heimfeld, Shelly, Raubitschek, Antony, Ziegler, Steven, Cotsapas, Chris, Sotoodehnia, Nona, Glass, Ian, Sunyaev, Shamil R., Kaul, Rajinder, Stamatoyannopoulos, John A.

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An expansive human regulatory lexicon encoded in transcription factor footprints von Neph, Shane, Vierstra, Jeff, Stergachis, Andrew B., Reynolds, Alex P., Haugen, Eric, Vernot, Benjamin, Thurman, Robert E., John, Sam, Sandstrom, Richard, Johnson, Audra K., Maurano, Matthew T., Humbert, Richard, Rynes, Eric, Wang, Hao, Vong, Shinny, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Roach, Vaughn, Dunn, Douglas, Neri, Jun, Schafer, Anthony, Hansen, R. Scott, Kutyavin, Tanya, Giste, Erika, Weaver, Molly, Canfield, Theresa, Sabo, Peter, Zhang, Miaohua, Balasundaram, Gayathri, Byron, Rachel, MacCoss, Michael J., Akey, Joshua M., Bender, M. A., Groudine, Mark, Kaul, Rajinder, Stamatoyannopoulos, John A.

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Conservation of trans-acting circuitry during mammalian regulatory evolution von Stergachis, Andrew B., Neph, Shane, Sandstrom, Richard, Haugen, Eric, Reynolds, Alex P., Zhang, Miaohua, Byron, Rachel, Canfield, Theresa, Stelhing-Sun, Sandra, Lee, Kristen, Thurman, Robert E., Vong, Shinny, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Giste, Erika, Dunn, Douglas, Vierstra, Jeff, Hansen, R. Scott, Johnson, Audra K., Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Treuting, Piper M., Kaul, Rajinder, Groudine, Mark, Bender, M. A., Borenstein, Elhanan, Stamatoyannopoulos, John A.

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The accessible chromatin landscape of the human genome von Thurman, Robert E., Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T., Haugen, Eric, Sheffield, Nathan C., Stergachis, Andrew B., Wang, Hao, Vernot, Benjamin, Garg, Kavita, John, Sam, Sandstrom, Richard, Bates, Daniel, Boatman, Lisa, Canfield, Theresa K., Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K., Frum, Tristan, Giste, Erika, Johnson, Audra K., Johnson, Ericka M., Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D., Qu, Hongzhu, Reynolds, Alex P., Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E., Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M., Song, Lingyun, Vong, Shinny, Weaver, Molly, Yan, Yongqi, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O., Hansen, R. Scott, Navas, Patrick A., Stamatoyannopoulos, George, Iyer, Vishwanath R., Lieb, Jason D., Sunyaev, Shamil R., Akey, Joshua M., Sabo, Peter J., Kaul, Rajinder, Furey, Terrence S., Dekker, Job, Crawford, Gregory E., Stamatoyannopoulos, John A.

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Principles of regulatory information conservation between mouse and human von Cheng, Yong, Ma, Zhihai, Kim, Bong-Hyun, Wu, Weisheng, Cayting, Philip, Boyle, Alan P., Sundaram, Vasavi, Xing, Xiaoyun, Dogan, Nergiz, Li, Jingjing, Euskirchen, Ghia, Lin, Shin, Lin, Yiing, Visel, Axel, Kawli, Trupti, Yang, Xinqiong, Patacsil, Dorrelyn, Keller, Cheryl A., Giardine, Belinda, The Mouse ENCODE Consortium, Kundaje, Anshul, Wang, Ting, Pennacchio, Len A., Weng, Zhiping, Hardison, Ross C., Snyder, Michael P.

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Genome-scale mapping of DNase I hypersensitivity von John, Sam, Sabo, Peter J, Canfield, Theresa K, Lee, Kristen, Vong, Shinny, Weaver, Molly, Wang, Hao, Vierstra, Jeff, Reynolds, Alex P, Thurman, Robert E, Stamatoyannopoulos, John A

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The DNMT3B DNA Methyltransferase Gene Is Mutated in the ICF Immunodeficiency Syndrome von Hansen, R. Scott, Wijmenga, Cisca, Luo, Ping, Stanek, Ann M., Canfield, Theresa K., Corry M. R. Weemaes, Gartler, Stanley M.

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Comprehensive analysis of the chromatin landscape in Drosophila melanogaster von Karpen, Gary H, Park, Peter J, Kharchenko, Peter V, Alekseyenko, Artyom A, Schwartz, Yuri B, Minoda, Aki, Riddle, Nicole C, Ernst, Jason, Sabo, Peter J, Larschan, Erica, Gorchakov, Andrey A, Gu, Tingting, Linder-Basso, Daniela, Plachetka, Annette, Shanower, Gregory, Tolstorukov, Michael Y, Luquette, Lovelace J, Xi, Ruibin, Jung, Youngsook L, Park, Richard W, Bishop, Eric P, Canfield, Theresa P, Sandstrom, Richard, Thurman, Robert E, MacAlpine, David M, Stamatoyannopoulos, John A, Kellis, Manolis, Elgin, Sarah C. R, Kuroda, Mitzi I, Pirrotta, Vincenzo

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Escape from gene silencing in ICF syndrome: evidence for advanced replication time as a major determinant von Hansen, R S, Stöger, R, Wijmenga, C, Stanek, A M, Canfield, T K, Luo, P, Matarazzo, M R, D'Esposito, M, Feil, R, Gimelli, G, Weemaes, C M, Laird, C D, Gartler, S M

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An expansive human regulatory lexicon encoded in transcription factor footprints von Neph, Shane, Vierstra, Jeff, Stergachis, Andrew B, Reynolds, Alex P, Haugen, Eric, Vernot, Benjamin, Thurman, Robert E, John, Sam, Sandstrom, Richard, Johnson, Audra K, Maurano, Matthew T, Humbert, Richard, Rynes, Eric, Vong, Shinny, Lee, Kristen, Bates, Daniel, Diegel, Morgan, Roach, Vaughn, Dunn, Douglas, Neri, Jun, Schafer, Anthony, Scott Hansen, R, Kutyavin, Tanya, Giste, Erika, Weaver, Molly, Canfield, Theresa, Sabo, Peter, Zhang, Miaohua, Balasundaram, Gayathri, Byron, Rachel, MacCoss, Michael J, Akey, Joshua M, Bender, M.A, Groudine, Mark, Kaul, Rajinder, Stamatoyannopoulos, John A

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The accessible chromatin landscape of the human genome von Thurman, Robert E, Rynes, Eric, Humbert, Richard, Vierstra, Jeff, Maurano, Matthew T, Haugen, Eric, Sheffield, Nathan C, Stergachis, Andrew B, Wang, Hao, Vernot, Benjamin, Garg, Kavita, Sandstrom, Richard, Bates, Daniel, Canfield, Theresa K, Diegel, Morgan, Dunn, Douglas, Ebersol, Abigail K, Frum, Tristan, Giste, Erika, Harding, Lisa, Johnson, Audra K, Johnson, Ericka M, Kutyavin, Tanya, Lajoie, Bryan, Lee, Bum-Kyu, Lee, Kristen, London, Darin, Lotakis, Dimitra, Neph, Shane, Neri, Fidencio, Nguyen, Eric D, Reynolds, Alex P, Roach, Vaughn, Safi, Alexias, Sanchez, Minerva E, Sanyal, Amartya, Shafer, Anthony, Simon, Jeremy M, Song, Lingyun, Vong, Shinny, Weaver, Molly, Zhang, Zhancheng, Zhang, Zhuzhu, Lenhard, Boris, Tewari, Muneesh, Dorschner, Michael O, Hansen, R. Scott, Navas, Patrick A, Stamatoyannopoulos, George, Iyer, Vishwanath R, Lieb, Jason D, Sunyaev, Shamil R, Akey, Joshua M, Sabo, Peter J, Kaul, Rajinder, Furey, Terrence S, Dekker, Job, Crawford, Gregory E, Stamatoyannopoulos, John A

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Genome-scale Mapping of DNaseI Hypersensitivity von John, Sam, Sabo, Peter J., Canfield, Theresa K., Lee, Kristen, Vong, Shinny, Weaver, Molly, Wang, Hao, Vierstra, Jeff, Reynolds, Alex P., Thurman, Robert E., Stamatoyannopoulos, John A.

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