Antibiotic-Induced Bacterial Cell Death Exhibits Physiological and Biochemical Hallmarks of Apoptosis von Dwyer, Daniel J., Camacho, Diogo M., Kohanski, Michael A., Callura, Jarred M., Collins, James J.

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Next-Generation Machine Learning for Biological Networks von Camacho, Diogo M., Collins, Katherine M., Powers, Rani K., Costello, James C., Collins, James J.

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Sequence-to-function deep learning frameworks for engineered riboregulators von Valeri, Jacqueline A., Collins, Katherine M., Ramesh, Pradeep, Alcantar, Miguel A., Lepe, Bianca A., Lu, Timothy K., Camacho, Diogo M.

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Wisdom of crowds for robust gene network inference von Marbach, Daniel, Costello, James C, Küffner, Robert, Vega, Nicole M, Prill, Robert J, Camacho, Diogo M, Allison, Kyle R, Kellis, Manolis, Collins, James J, Stolovitzky, Gustavo

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A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip von Jalili-Firoozinezhad, Sasan, Gazzaniga, Francesca S., Calamari, Elizabeth L., Camacho, Diogo M., Fadel, Cicely W., Bein, Amir, Swenor, Ben, Nestor, Bret, Cronce, Michael J., Tovaglieri, Alessio, Levy, Oren, Gregory, Katherine E., Breault, David T., Cabral, Joaquim M. S., Kasper, Dennis L., Novak, Richard, Ingber, Donald E.

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Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites von Tovaglieri, Alessio, Sontheimer-Phelps, Alexandra, Geirnaert, Annelies, Prantil-Baun, Rachelle, Camacho, Diogo M, Chou, David B, Jalili-Firoozinezhad, Sasan, de Wouters, Tomás, Kasendra, Magdalena, Super, Michael, Cartwright, Mark J, Richmond, Camilla A, Breault, David T, Lacroix, Christophe, Ingber, Donald E

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Functional characterization of bacterial sRNAs using a network biology approach von Modi, Sheetal R, Camacho, Diogo M, Kohanski, Michael A, Walker, Graham C, Collins, James J

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Harnessing Colon Chip Technology to Identify Commensal Bacteria That Promote Host Tolerance to Infection von Gazzaniga, Francesca S., Camacho, Diogo M., Wu, Meng, Silva Palazzo, Matheus F., Dinis, Alexandre L. M., Grafton, Francis N., Cartwright, Mark J., Super, Michael, Kasper, Dennis L., Ingber, Donald E.

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Directed differentiation of human induced pluripotent stem cells into mature kidney podocytes and establishment of a Glomerulus Chip von Musah, Samira, Dimitrakakis, Nikolaos, Camacho, Diogo M., Church, George M., Ingber, Donald E.

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Deep-Learning Resources for Studying Glycan-Mediated Host-Microbe Interactions von Bojar, Daniel, Powers, Rani K., Camacho, Diogo M., Collins, James J.

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Enhancers of Host Immune Tolerance to Bacterial Infection Discovered Using Linked Computational and Experimental Approaches von Sperry, Megan M., Novak, Richard, Keshari, Vishal, Dinis, Alexandre L. M., Cartwright, Mark J., Camacho, Diogo M., Paré, Jean‐François, Super, Michael, Levin, Michael, Ingber, Donald E.

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Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria von Pandey, Shree P, Winkler, Jonathan A, Li, Hu, Camacho, Diogo M, Collins, James J, Walker, Graham C

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BioAutoMATED: An end-to-end automated machine learning tool for explanation and design of biological sequences von Valeri, Jacqueline A., Soenksen, Luis R., Collins, Katherine M., Ramesh, Pradeep, Cai, George, Powers, Rani, Angenent-Mari, Nicolaas M., Camacho, Diogo M., Wong, Felix, Lu, Timothy K., Collins, James J.

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Nutritional deficiency in an intestine-on-a-chip recapitulates injury hallmarks associated with environmental enteric dysfunction von Bein, Amir, Fadel, Cicely W., Swenor, Ben, Cao, Wuji, Powers, Rani K., Camacho, Diogo M., Naziripour, Arash, Parsons, Andrew, LoGrande, Nina, Sharma, Sanjay, Kim, Seongmin, Jalili-Firoozinezhad, Sasan, Grant, Jennifer, Breault, David T., Iqbal, Junaid, Ali, Asad, Denson, Lee A., Moore, Sean R., Prantil-Baun, Rachelle, Goyal, Girija, Ingber, Donald E.

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Enhancers of Host Immune Tolerance to Bacterial Infection Discovered Using Linked Computational and Experimental Approaches (Adv. Sci. 26/2022) von Sperry, Megan M., Novak, Richard, Keshari, Vishal, Dinis, Alexandre L. M., Cartwright, Mark J., Camacho, Diogo M., Paré, Jean‐François, Super, Michael, Levin, Michael, Ingber, Donald E.

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Systems Biology Strikes Gold von Camacho, Diogo M., Collins, James J.

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Author Correction: A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip von Jalili-Firoozinezhad, Sasan, Gazzaniga, Francesca S., Calamari, Elizabeth L., Camacho, Diogo M., Fadel, Cicely W., Bein, Amir, Swenor, Ben, Nestor, Bret, Cronce, Michael J., Tovaglieri, Alessio, Levy, Oren, Gregory, Katherine E., Breault, David T., Cabral, Joaquim M. S., Kasper, Dennis L., Novak, Richard, Ingber, Donald E.

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Allosteric Inhibition of MALT1 Is Efficacious in a Model of Chronic Graft-Versus-Host Disease and Modulates Immunometabolic Activation von Dispirito, Joanna R, Badur, Mehmet G, Biswas, Subhabrata ‘Brad‘, Camacho, Diogo M, Chalishazar, Aditi, DeChristopher, Brian, Sellers, Katie, Steadman, Mya, Soh, Keng, Monroe, John, Long, Andrew

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Complex Human Gut Microbiome Cultured In An Anaerobic Human Gut-On-A-Chip von Novak, Richard, Nestor, Bret Andrew, Cronce, Michael J, Camacho, Diogo M, Ingber, Donald E, Jalili-Firoozinezhad, Sasan, Gazzaniga, Francesca S, Calamari, Elizabeth, Fadel, Cicely, Bein, Amir, Kasper, Dennis

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RIBOREGULATORS AND METHODS OF USE THEREOF von Camacho, Diogo M, Garruss, Alexander S, Collins, Katherine, Collins, James J, Soenksen Martinez, Luis Ruben, Church, George M, Angenent-Mari, Nicolaas

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