Accuracy of multi-trait genomic selection using different methods von Calus, Mario P L, Veerkamp, Roel F

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Whole-genome regression and prediction methods applied to plant and animal breeding von de Los Campos, Gustavo, Hickey, John M, Pong-Wong, Ricardo, Daetwyler, Hans D, Calus, Mario P L

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Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds von Zhang, Qianqian, Calus, Mario P L, Guldbrandtsen, Bernt, Lund, Mogens S, Sahana, Goutam

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Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein-Friesian cattle von Veerkamp, Roel F, Bouwman, Aniek C, Schrooten, Chris, Calus, Mario P L

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Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking von Daetwyler, Hans D, Calus, Mario P L, Pong-Wong, Ricardo, de Los Campos, Gustavo, Hickey, John M

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SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium von Calus, Mario P L, Vandenplas, Jérémie

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Breeding Top Genotypes and Accelerating Response to Recurrent Selection by Selecting Parents with Greater Gametic Variance von Bijma, Piter, Wientjes, Yvonne C J, Calus, Mario P L

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The long-term effects of genomic selection: 1. Response to selection, additive genetic variance, and genetic architecture von Wientjes, Yvonne C J, Bijma, Piter, Calus, Mario P L, Zwaan, Bas J, Vitezica, Zulma G, van den Heuvel, Joost

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A second-level diagonal preconditioner for single-step SNPBLUP von Vandenplas, Jeremie, Calus, Mario P L, Eding, Herwin, Vuik, Cornelis

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Genomic Prediction Using Individual-Level Data and Summary Statistics from Multiple Populations von Vandenplas, Jeremie, Calus, Mario P L, Gorjanc, Gregor

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Technical note: Genetic groups in single-step single nucleotide polymorphism best linear unbiased predictor von Vandenplas, Jeremie, Eding, Herwin, Calus, Mario P.L.

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Empirical and deterministic accuracies of across-population genomic prediction von Wientjes, Yvonne C J, Veerkamp, Roel F, Bijma, Piter, Bovenhuis, Henk, Schrooten, Chris, Calus, Mario P L

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Human-Mediated Introgression of Haplotypes in a Modern Dairy Cattle Breed von Zhang, Qianqian, Calus, Mario P L, Bosse, Mirte, Sahana, Goutam, Lund, Mogens Sandø, Guldbrandtsen, Bernt

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Deflated preconditioned conjugate gradient method for solving single-step BLUP models efficiently von Vandenplas, Jérémie, Eding, Herwin, Calus, Mario P L, Vuik, Cornelis

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Genomic evaluation for a three-way crossbreeding system considering breed-of-origin of alleles von Sevillano, Claudia A, Vandenplas, Jeremie, Bastiaansen, John W M, Bergsma, Rob, Calus, Mario P L

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Multi-population Genomic Relationships for Estimating Current Genetic Variances Within and Genetic Correlations Between Populations von Wientjes, Yvonne C J, Bijma, Piter, Vandenplas, Jérémie, Calus, Mario P L

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Fecal microbial composition associated with variation in feed efficiency in pigs depends on diet and sex von Verschuren, Lisanne M G, Calus, Mario P L, Jansman, Alfons J M, Bergsma, Rob, Knol, Egbert F, Gilbert, Hélène, Zemb, Olivier

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The effect of linkage disequilibrium and family relationships on the reliability of genomic prediction von Wientjes, Yvonne C J, Veerkamp, Roel F, Calus, Mario P L

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Computational strategies for the preconditioned conjugate gradient method applied to ssSNPBLUP, with an application to a multivariate maternal model von Vandenplas, Jeremie, Eding, Herwin, Bosmans, Maarten, Calus, Mario P. L.

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The long-term effects of genomic selection: 2. Changes in allele frequencies of causal loci and new mutations von Wientjes, Yvonne C J, Bijma, Piter, van den Heuvel, Joost, Zwaan, Bas J, Vitezica, Zulma G, Calus, Mario P L

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