Properties of MHC class I presented peptides that enhance immunogenicity von Calis, Jorg J A, Maybeno, Matt, Greenbaum, Jason A, Weiskopf, Daniela, De Silva, Aruna D, Sette, Alessandro, Keşmir, Can, Peters, Bjoern

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Get Spliced: Uniting Alternative Splicing and Arthritis von van Haaren, Maurice J H, Steller, Levina Bertina, Vastert, Sebastiaan J, Calis, Jorg J A, van Loosdregt, Jorg

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Degenerate T-cell recognition of peptides on MHC molecules creates large holes in the T-cell repertoire von Calis, Jorg J A, de Boer, Rob J, Keşmir, Can

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Characterizing immune repertoires by high throughput sequencing: strategies and applications von Calis, Jorg J.A, Rosenberg, Brad R

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Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs von Calis, Jorg J. A., Reinink, Peter, Keller, Christin, Kloetzel, Peter M., Keşmir, Can

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Complex Autoinflammatory Syndrome Unveils Fundamental Principles of JAK1 Kinase Transcriptional and Biochemical Function von Gruber, Conor N., Calis, Jorg J.A., Buta, Sofija, Evrony, Gilad, Martin, Jerome C., Uhl, Skyler A., Caron, Rachel, Jarchin, Lauren, Dunkin, David, Phelps, Robert, Webb, Bryn D., Saland, Jeffrey M., Merad, Miriam, Orange, Jordan S., Mace, Emily M., Rosenberg, Brad R., Gelb, Bruce D., Bogunovic, Dusan

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N6-adenosine methylation (m6A) is involved in the life and death decisions of T cells von Calis, J. J. A., van Loosdregt, J.

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Human Plaque Myofibroblasts to Study Mechanisms of Atherosclerosis von Buono, Michele F, Benavente, Ernest Diez, Slenders, Lotte, Methorst, Daisey, Tessels, Daniëlle, Mili, Eloi, Finger, Roxy, Kapteijn, Daniek, Daniels, Mark, van den Dungen, Noortje A M, Calis, Jorg J A, Mol, Barend M, de Borst, Gert J, de Kleijn, Dominique P V, Pasterkamp, Gerard, den Ruijter, Hester M, Mokry, Michal

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Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations von Geneugelijk, Kirsten, Thus, Kirsten A, van Deutekom, Hanneke W M, Calis, Jorg J A, Borst, Eric, Keşmir, Can, Oudshoorn, Machteld, van der Holt, Bronno, Meijer, Ellen, Zeerleder, Sacha, de Groot, Marco R, von dem Borne, Peter A, Schaap, Nicolaas, Cornelissen, Jan, Kuball, Jürgen, Spierings, Eric

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Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown von Chung, Hachung, Calis, Jorg J.A., Wu, Xianfang, Sun, Tony, Yu, Yingpu, Sarbanes, Stephanie L., Dao Thi, Viet Loan, Shilvock, Abigail R., Hoffmann, H.-Heinrich, Rosenberg, Brad R., Rice, Charles M.

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N6-Methyladenosine Directly Regulates CD40L Expression in CD4+ T Lymphocytes von van Vroonhoven, Ellen C. N., Picavet, Lucas W., Scholman, Rianne C., van den Dungen, Noortje A. M., Mokry, Michal, Evers, Anouk, Lebbink, Robert J., Calis, Jorg J. A., Vastert, Sebastiaan J., van Loosdregt, Jorg

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Multi-omics integration identifies key upstream regulators of pathomechanisms in hypertrophic cardiomyopathy due to truncating MYBPC3 mutations von Pei, J, Schuldt, M, Nagyova, E, Gu, Z, El Bouhaddani, S, Yiangou, L, Jansen, M, Calis, J J A, Dorsch, L M, Blok, C Snijders, van den Dungen, N A M, Lansu, N, Boukens, B J, Efimov, I R, Michels, M, Verhaar, M C, de Weger, R, Vink, A, van Steenbeek, F G, Baas, A F, Davis, R P, Uh, H W, Kuster, D W D, Cheng, C, Mokry, M, van der Velden, J, Asselbergs, F W, Harakalova, M

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Cyclin F Controls Cell-Cycle Transcriptional Outputs by Directing the Degradation of the Three Activator E2Fs von Clijsters, Linda, Hoencamp, Claire, Calis, Jorg J.A., Marzio, Antonio, Handgraaf, Shanna M., Cuitino, Maria C., Rosenberg, Brad R., Leone, Gustavo, Pagano, Michele

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High-throughput epitope discovery reveals frequent recognition of neo-antigens by CD4+ T cells in human melanoma von Linnemann, Carsten, van Buuren, Marit M, Bies, Laura, Verdegaal, Els M E, Schotte, Remko, Calis, Jorg J A, Behjati, Sam, Velds, Arno, Hilkmann, Henk, Atmioui, Dris el, Visser, Marten, Stratton, Michael R, Haanen, John B A G, Spits, Hergen, van der Burg, Sjoerd H, Schumacher, Ton N M

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Developmental programming in human umbilical cord vein endothelial cells following fetal growth restriction von Terstappen, Fieke, Calis, Jorg J A, Paauw, Nina D, Joles, Jaap A, van Rijn, Bas B, Mokry, Michal, Plösch, Torsten, Lely, A Titia

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Genome-wide association analysis in dilated cardiomyopathy reveals two new players in systolic heart failure on chromosomes 3p25.1 and 22q11.23 von Garnier, Sophie, Harakalova, Magdalena, Weiss, Stefan, Mokry, Michal, Regitz-Zagrosek, Vera, Hengstenberg, Christian, Cappola, Thomas P, Isnard, Richard, Arbustini, Eloisa, Cook, Stuart A, van Setten, Jessica, Calis, Jorg J A, Hakonarson, Hakon, Morley, Michael P, Stark, Klaus, Prasad, Sanjay K, Li, Jin, O'Regan, Declan P, Grasso, Maurizia, Müller-Nurasyid, Martina, Meitinger, Thomas, Empana, Jean-Philippe, Strauch, Konstantin, Waldenberger, Melanie, Marguiles, Kenneth B, Seidman, Christine E, Kararigas, Georgios, Meder, Benjamin, Haas, Jan, Boutouyrie, Pierre, Lacolley, Patrick, Jouven, Xavier, Erdmann, Jeanette, Blankenberg, Stefan, Wichter, Thomas, Ruppert, Volker, Tavazzi, Luigi, Dubourg, Olivier, Roizes, Gérard, Dorent, Richard, de Groote, Pascal, Fauchier, Laurent, Trochu, Jean-Noël, Aupetit, Jean-François, Bilinska, Zofia T, Germain, Marine, Völker, Uwe, Hemerich, Daiane, Raji, Ibticem, Bacq-Daian, Delphine, Proust, Carole, Remior, Paloma, Gomez-Bueno, Manuel, Lehnert, Kristin, Maas, Renee, Olaso, Robert, Saripella, Ganapathi Varma, Felix, Stephan B, McGinn, Steven, Duboscq-Bidot, Laëtitia, van Mil, Alain, Besse, Céline, Fontaine, Vincent, Blanché, Hélène, Ader, Flavie, Keating, Brendan, Curjol, Angélique, Boland, Anne, Komajda, Michel, Cambien, François, Deleuze, Jean-François, Dörr, Marcus, Asselbergs, Folkert W, Villard, Eric, Trégouët, David-Alexandre, Charron, Philippe

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Airway and Blood Monocyte Transcriptomic Profiling Reveals an Antiviral Phenotype in Infants With Severe Respiratory Syncytial Virus Infection von Chappin, K, Besteman, S B, Hennus, M P, Wildenbeest, J G, Mokry, M, Bont, L J, van der Vlist, M, Calis, J J A

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Transcriptome of airway neutrophils reveals an interferon response in life-threatening respiratory syncytial virus infection von Besteman, Sjanna B., Callaghan, Amie, Langedijk, Annefleur C., Hennus, Marije P., Meyaard, Linde, Mokry, Michal, Bont, Louis J., Calis, Jorg J.A.

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Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney transplantation von Otten, Henny G, Calis, Jorg J.A, Keşmir, Can, van Zuilen, Arjan D, Spierings, Eric

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Recombinant Interleukin‐1 Receptor Antagonist Is an Effective First‐Line Treatment Strategy in New‐Onset Systemic Juvenile Idiopathic Arthritis, Irrespective of HLA‐DRB1 Background... von Erkens, Remco G. A., Calis, Jorg J. A., Verwoerd, Anouk, De Roock, Sytze, Ter Haar, Nienke M., Den Engelsman, Gerda, Van der Veken, Lars T., Ernst, Robert F., Van Deutekom, Hanneke W. M., Pickering, Alex, Scholman, Rianne C., Jansen, Marc H. A., Swart, Joost F., Sinha, Rashmi, Roth, Johannes, Schulert, Grant S., Grom, Alexei A., Van Loosdregt, Jorg, Vastert, Sebastiaan J.

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