Systematic Discovery of Xist RNA Binding Proteins von Chu, Ci, Zhang, Qiangfeng Cliff, da Rocha, Simão Teixeira, Flynn, Ryan A., Bharadwaj, Maheetha, Calabrese, J. Mauro, Magnuson, Terry, Heard, Edith, Chang, Howard Y.

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Phase separation drives X-chromosome inactivation von Cerase, Andrea, Calabrese, J. Mauro, Tartaglia, Gian Gaetano

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Topoisomerases facilitate transcription of long genes linked to autism von King, Ian F., Yandava, Chandri N., Mabb, Angela M., Hsiao, Jack S., Huang, Hsien-Sung, Pearson, Brandon L., Calabrese, J. Mauro, Starmer, Joshua, Parker, Joel S., Magnuson, Terry, Chamberlain, Stormy J., Philpot, Benjamin D., Zylka, Mark J.

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Analysis of RNA–protein networks with RNP-MaP defines functional hubs on RNA von Weidmann, Chase A., Mustoe, Anthony M., Jariwala, Parth B., Calabrese, J. Mauro, Weeks, Kevin M.

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Enhancer switching in cell lineage priming is linked to eRNA, Brg1’s AT-hook, and SWI/SNF recruitment von Saha, Dhurjhoti, Animireddy, Srinivas, Lee, Junwoo, Thommen, Anna, Murvin, McKenzie M., Lu, Yue, Calabrese, J. Mauro, Bartholomew, Blaine

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Site-Specific Silencing of Regulatory Elements as a Mechanism of X Inactivation von Calabrese, J. Mauro, Sun, Wei, Song, Lingyun, Mugford, Joshua W., Williams, Lucy, Yee, Della, Starmer, Joshua, Mieczkowski, Piotr, Crawford, Gregory E., Magnuson, Terry

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Functional classification of long non-coding RNAs by k-mer content von Kirk, Jessime M., Kim, Susan O., Inoue, Kaoru, Smola, Matthew J., Lee, David M., Schertzer, Megan D., Wooten, Joshua S., Baker, Allison R., Sprague, Daniel, Collins, David W., Horning, Christopher R., Wang, Shuo, Chen, Qidi, Weeks, Kevin M., Mucha, Peter J., Calabrese, J. Mauro

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lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA von Schertzer, Megan D., Braceros, Keean C.A., Starmer, Joshua, Cherney, Rachel E., Lee, David M., Salazar, Gabriela, Justice, Megan, Bischoff, Steven R., Cowley, Dale O., Ariel, Pablo, Zylka, Mark J., Dowen, Jill M., Magnuson, Terry, Calabrese, J. Mauro

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A statistical method for joint estimation of cis‐eQTLs and parent‐of‐origin effects under family trio design von Zhabotynsky, Vasyl, Inoue, Kaoru, Magnuson, Terry, Mauro Calabrese, J., Sun, Wei

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Divergent Transcription from Active Promoters von Seila, Amy C, Calabrese, J. Mauro, Levine, Stuart S, Yeo, Gene W, Rahl, Peter B, Flynn, Ryan A, Young, Richard A, Sharp, Phillip A

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Quantitative Analysis of Argonaute Protein Reveals MicroRNA-Dependent Localization to Stress Granules von Leung, Anthony K. L., Calabrese, J. Mauro, Sharp, Phillip A.

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RNA sequence analysis defines Dicer's role in mouse embryonic stem cells von Calabrese, J. Mauro, Seila, Amy C, Yeo, Gene W, Sharp, Phillip A

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Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells von Marson, Alexander, Levine, Stuart S., Cole, Megan F., Frampton, Garrett M., Brambrink, Tobias, Johnstone, Sarah, Guenther, Matthew G., Johnston, Wendy K., Wernig, Marius, Newman, Jamie, Calabrese, J. Mauro, Dennis, Lucas M., Volkert, Thomas L., Gupta, Sumeet, Love, Jennifer, Hannett, Nancy, Sharp, Phillip A., Bartel, David P., Jaenisch, Rudolf, Young, Richard A.

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Elements at the 5 ' end of Xist harbor SPEN-independent transcriptional antiterminator activity von Trotman, Jackson B., Lee, David M., Cherney, Rachel E., Kim, Susan O., Inoue, Kaoru, Schertzer, Megan D., Bischoff, Steven R., Cowley, Dale O., Calabrese, J. Mauro

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A piggyBac-based toolkit for inducible genome editing in mammalian cells von Schertzer, Megan D, Thulson, Eliza, Braceros, Keean C A, Lee, David M, Hinkle, Emma R, Murphy, Ryan M, Kim, Susan O, Vitucci, Eva C M, Calabrese, J Mauro

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Proximity-dependent recruitment of Polycomb repressive complexes by the lncRNA Airn von Braceros, Aki K., Schertzer, Megan D., Omer, Arina, Trotman, Jackson B., Davis, Eric S., Dowen, Jill M., Phanstiel, Douglas H., Aiden, Erez Lieberman, Calabrese, J. Mauro

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Nonlinear sequence similarity between the Xist and Rsx long noncoding RNAs suggests shared functions of tandem repeat domains von Sprague, Daniel, Waters, Shafagh A, Kirk, Jessime M, Wang, Jeremy R, Samollow, Paul B, Waters, Paul D, Calabrese, J Mauro

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The control of polycomb repressive complexes by long noncoding RNAs von Trotman, Jackson B., Braceros, Keean C. A., Cherney, Rachel E., Murvin, McKenzie M., Calabrese, J. Mauro

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A latent pro-survival function for the mir-290-295 cluster in mouse embryonic stem cells von Zheng, Grace X Y, Ravi, Arvind, Calabrese, J Mauro, Medeiros, Lea A, Kirak, Oktay, Dennis, Lucas M, Jaenisch, Rudolf, Burge, Christopher B, Sharp, Phillip A

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A monoclonal antibody raised against human EZH2 cross-reacts with the RNA-binding protein SAFB von Cherney, Rachel E, Mills, Christine A, Herring, Laura E, Braceros, Aki K, Calabrese, J Mauro

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