JBrowse 2: a modular genome browser with views of synteny and structural variation von Diesh, Colin, Stevens, Garrett J, Xie, Peter, De Jesus Martinez, Teresa, Hershberg, Elliot A, Leung, Angel, Guo, Emma, Dider, Shihab, Zhang, Junjun, Bridge, Caroline, Hogue, Gregory, Duncan, Andrew, Morgan, Matthew, Flores, Tia, Bimber, Benjamin N, Haw, Robin, Cain, Scott, Buels, Robert M, Stein, Lincoln D, Holmes, Ian H

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WormBase: a modern Model Organism Information Resource von Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, Davis, Paul, Gao, Sibyl, Grove, Christian A, Kishore, Ranjana, Lee, Raymond Y N, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Auken, Kimberly V, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WormBase 2016: expanding to enable helminth genomic research von Howe, Kevin L, Bolt, Bruce J, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Done, James, Down, Thomas, Gao, Sibyl, Grove, Christian, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, Lomax, Jane, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Stanley, Eleanor, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes von Grove, Christian, Cain, Scott, Chen, Wen J., Davis, Paul, Harris, Todd, Howe, Kevin L., Kishore, Ranjana, Lee, Raymond, Paulini, Michael, Raciti, Daniela, Tuli, Mary Ann, Van Auken, Kimberly, Williams, Gary

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WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans von Davis, Paul, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, da Veiga Beltrame, Eduardo, Diamantakis, Stavros, Gao, Sibyl, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd W, Kishore, Ranjana, Le, Tuan, Lee, Raymond Y N, Luypaert, Manuel, Müller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Quinton-Tulloch, Mark, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Singh, Archana, Stickland, Tim, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Berriman, Matt, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WormBase 2017: molting into a new stage von Lee, Raymond Y N, Howe, Kevin L, Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Gao, Sibyl, Grove, Christian, Kishore, Ranjana, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye, Russell, Matt, Schindelman, Gary, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Alliance of Genome Resources Portal: unified model organism research platform von Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzi, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Bello, Susan M., Blake, Judith A., Blodgett, Olin, Bradford, Yvonne M., Bult, Carol J., Cain, Scott, Calvi, Brian R., Carbon, Seth, Chan, Juancarlos, Chen, Wen J., Cherry, J. Michael, Cho, Jaehyoung, Christie, Karen R., Crosby, Madeline A., De Pons, Jeff, Dolan, Mary E., dos Santos, Gilberto, Dunn, Barbara Dunn Nathan, Eagle, Anne, Ebert, Dustin, Engel, Stacia R., Fashena, David, Frazer, Ken, Gao, Sibyl, Gondwe, Felix, Goodman, Josh, Gramates, L. Sian, Grove, Christian A., Harris, Todd, Harrison, Marie-Claire, Howe, Douglas G., Howe, Kevin L., Jha, Sagar, Kadin, James A., Kaufman, Thomas C., Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Laulederkind, Stan, Lee, Raymond, MacPherson, Kevin A., Marygold, Steven J., Matthews, Beverley, Millburn, Gillian, Miyasato, Stuart, Moxon, Sierra, Mueller, Hans-Michael, Mungall, Christopher, Muruganujan, Anushya, Mushayahama, Tremayne, Nash, Robert S., Ng, Patrick, Paulini, Michael, Perrimon, Norbert, Pich, Christian, Raciti, Daniela, Richardson, Joel E., Russell, Matthew, Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Shimoyama, Mary, Simison, Matt, Smith, Cynthia, Shaw, David R., Shrivatsav, Ajay, Skrzypek, Marek, Smith, Jennifer R., Sternberg, Paul W., Tabone, Christopher J., Thomas, Paul D., Thota, Jyothi, Toro, Sabrina, Tomczuk, Monika, Tutaj, Marek, Tutaj, Monika, Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E., Wang, Shur-Jen, Weng, Shuai, Westerfield, Monte, Williams, Gary, Wong, Edith D., Wright, Adam, Yook, Karen

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Harmonizing model organism data in the Alliance of Genome Resources von Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzanne A, Alexander, Micheal, Anagnostopoulos, Anna V, Antonazzo, Giulia, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blake, Judith A, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Michael Cherry, J, Cho, Jaehyoung, Christie, Karen R, Crosby, Madeline A, Davis, Paul, da Veiga Beltrame, Eduardo, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Douglass, Eric, Dunn, Barbara, Eagle, Anne, Ebert, Dustin, Engel, Stacia R, Fashena, David, Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gibson, Adam C, Gondwe, Felix, Goodman, Josh, Sian Gramates, L, Grove, Christian A, Hale, Paul, Harris, Todd, Thomas Hayman, G, Hill, David P, Howe, Douglas G, Howe, Kevin L, Hu, Yanhui, Jha, Sagar, Kadin, James A, Kaufman, Thomas C, Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A, Martin, Ryan, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nalabolu, Harika S, Nash, Robert S, Ng, Patrick, Nuin, Paulo, Paddock, Holly, Paulini, Michael, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Simison, Matt, Shaw, David R, Shrivatsav, Ajay, Singer, Amy, Skrzypek, Marek, Smith, Constance M, Smith, Cynthia L

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ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data von Arnaiz, Olivier, Cain, Scott, Cohen, Jean, Sperling, Linda

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FAIR Header Reference genome: a TRUSTworthy standard von Wright, Adam, Wilkinson, Mark D, Mungall, Christopher, Cain, Scott, Richards, Stephen, Sternberg, Paul, Provin, Ellen, Jacobs, Jonathan L, Geib, Scott, Raciti, Daniela, Yook, Karen, Stein, Lincoln, Molik, David C

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Setting Up the JBrowse 2 Genome Browser von Diesh, Colin, Buels, Robert, Stevens, Garrett, Bridge, Caroline, Cain, Scott, Stein, Lincoln, Holmes, Ian

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JBrowse Jupyter: a Python interface to JBrowse 2 von De Jesus Martinez, Teresa, Hershberg, Elliot A, Guo, Emma, Stevens, Garrett J, Diesh, Colin, Xie, Peter, Bridge, Caroline, Cain, Scott, Haw, Robin, Buels, Robert M, Stein, Lincoln D, Holmes, Ian H

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ParameciumDB: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data von Arnaiz, Olivier, Cain, Scott, Cohen, Jean, Sperling, Linda

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Abstract LB503: Using JBrowse 2 plugins to visualize cancer genomic data von Haw, Robin Andrew, Diesh, Colin, Bridge, Caroline, Buels, Rob, Stevens, Garrett, Xie, Peter, Martinez, Teresa, Hershberg, Elliot, Zhang, Junjun, Dider, Shihab, Cain, Scott, Stein, Lincoln, Holmes, Ian

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Abstract 6400: JBrowse 2: An extensible open-source platform for modern genome analysis von Cain, Scott, Haw, Robin, Bridge, Caroline, Zhang, Junjun, Buels, Robert, Diesh, Colin, Stevens, Garrett, Martinez, Teresa, Xie, Peter K., Hershberg, Elliot, Dider, Shihab, Stein, Lincoln, Holmes, Ian

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The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology von Gill, Erin E, Jia, Baofeng, Murall, Carmen Lia, Poujol, Raphaël, Anwar, Muhammad Zohaib, John, Nithu Sara, Richardsson, Justin, Hobb, Ashley, Olabode, Abayomi S, Lepsa, Alexandru, Duggan, Ana T, Tyler, Andrea D, N'Guessan, Arnaud, Kachru, Atul, Chan, Brandon, Yoshida, Catherine, Yung, Christina K, Bujold, David, Andric, Dusan, Su, Edmund, Griffiths, Emma J, Van Domselaar, Gary, Jolly, Gordon W, Ward, Heather K E, Feher, Henrich, Baker, Jared, Simpson, Jared T, Uddin, Jaser, Ragoussis, Jiannis, Eubank, Jon, Fritz, Jörg H, Gálvez, José Héctor, Fang, Karen, Cullion, Kim, Rivera, Leonardo, Xiang, Linda, Croxen, Matthew A, Shiell, Mitchell, Prystajecky, Natalie, Quirion, Pierre-Olivier, Bajari, Rosita, Rich, Samantha, Mubareka, Samira, Moreira, Sandrine, Cain, Scott, Sutcliffe, Steven G, Kraemer, Susanne A, Alturmessov, Yelizar, Joly, Yann, Cphln Consortium, CanCOGeN Consortium, VirusSeq Data Portal Academic And Health Network, Fiume, Marc, Snutch, Terrance P, Bell, Cindy, Lopez-Correa, Catalina, Hussin, Julie G, Joy, Jeffrey B, Colijn, Caroline, Gordon, Paul M K, Hsiao, William W L, Poon, Art F Y, Knox, Natalie C, Courtot, Mélanie, Stein, Lincoln, Otto, Sarah P, Bourque, Guillaume, Shapiro, B Jesse, Brinkman, Fiona S L

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GMODWeb: a web framework for the Generic Model Organism Database von O'Connor, Brian D, Day, Allen, Cain, Scott, Arnaiz, Olivier, Sperling, Linda, Stein, Lincoln D

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Harmonizing model organism data in the Alliance of Genome Resources von Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzanne A., Anagnostopoulos, Anna V., Antonazzo, Giulia, Argasinska, Joanna, Attrill, Helen, Becerra, Andrés, Bello, Susan M., Blake, Judith A., Blodgett, Olin, Bradford, Yvonne M., Bult, Carol J., Cain, Scott, Calvi, Brian R., Carbon, Seth, Chen, Wen J., Cho, Jaehyoung, Christie, Karen R., Crosby, Madeline A., Davis, Paul, da Veiga Beltrame, Eduardo, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E., Douglass, Eric, Dunn, Barbara, Eagle, Anne, Engel, Stacia R., Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gondwe, Felix, Goodman, Josh, Sian Gramates, L., Grove, Christian A., Hale, Paul, Harris, Todd, Thomas Hayman, G., Hill, David P., Howe, Douglas G., Howe, Kevin L., Hu, Yanhui, Kaufman, Thomas C., Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E., Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A., Martin, Ryan, Marygold, Steven J., Matthews, Beverley, McAndrews, Monica S., Miyasato, Stuart, Motenko, Howie, Muller, Hans-Michael, Mungall, Christopher J., Muruganujan, Anushya, Mushayahama, Tremayne, Nalabolu, Harika S., Nash, Robert S., Ng, Patrick, Paulini, Michael, Perrimon, Norbert, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E., Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Shrivatsav, Ajay, Singer, Amy, Skrzypek, Marek, Smith, Constance M., Smith, Cynthia L., Smith, Jennifer R., Stein, Lincoln, Sternberg, Paul W., Tabone, Christopher J., Thota, Jyothi, Tomczuk, Monika, Tutaj, Marek A., Urbano, Jose-Maria, Van Auken, Kimberly, Van Slyke, Ceri E., Wang, Qinghua, Wang, Shur-Jen, Weng, Shuai, Westerfield, Monte, Williams, Gary, Wilming, Laurens G., Wong, Edith D., Yook, Karen, Zarowiecki, Magdalena, Zhou, Pinglei, Zytkovicz, Mark

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The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data von Jung, Sook, Menda, Naama, Redmond, Seth, Buels, Robert M, Friesen, Maren, Bendana, Yuri, Sanderson, Lacey-Anne, Lapp, Hilmar, Lee, Taein, MacCallum, Bob, Bett, Kirstin E, Cain, Scott, Clements, Dave, Mueller, Lukas A, Main, Dorrie

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Creation of genome-wide protein expression libraries using random activation of gene expression von Harrington, John J, Sherf, Bruce, Rundlett, Stephen, Jackson, P. David, Perry, Rob, Cain, Scott, Leventhal, Christina, Thornton, Mark, Ramachandran, Rakesh, Whittington, Jessica, Lerner, Laura, Costanzo, Dana, McElligott, Karen, Boozer, Sherry, Mays, Robert, Smith, Emery, Veloso, Neil, Klika, Alison, Hess, Jennifer, Cothren, Kevin, Lo, Kalok, Offenbacher, Jason, Danzig, Joel, Ducar, Matt

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