Immunobiology of Long Noncoding RNAs von Atianand, Maninjay K, Caffrey, Daniel R, Fitzgerald, Katherine A

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AIM2 recognizes cytosolic dsDNA and forms a caspase-1-activating inflammasome with ASC von Ablasser, Andrea, Caffrey, Daniel. R, Latz, Eicke, Horvath, Gabor, Hornung, Veit, Fitzgerald, Katherine A, Bauernfeind, Franz, Charrel-Dennis, Marie

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A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes von Carpenter, Susan, Aiello, Daniel, Atianand, Maninjay K., Ricci, Emiliano P., Gandhi, Pallavi, Hall, Lisa L., Byron, Meg, Monks, Brian, Henry-Bezy, Meabh, Lawrence, Jeanne B., O'Neill, Luke A. J., Moore, Melissa J., Caffrey, Daniel R., Fitzgerald, Katherine A.

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A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation von Atianand, Maninjay K., Hu, Wenqian, Satpathy, Ansuman T., Shen, Ying, Ricci, Emiliano P., Alvarez-Dominguez, Juan R., Bhatta, Ankit, Schattgen, Stefan A., McGowan, Jason D., Blin, Juliana, Braun, Joerg E., Gandhi, Pallavi, Moore, Melissa J., Chang, Howard Y., Lodish, Harvey F., Caffrey, Daniel R., Fitzgerald, Katherine A.

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PFRED: A computational platform for siRNA and antisense oligonucleotides design von Sciabola, Simone, Xi, Hualin, Cruz, Dario, Cao, Qing, Lawrence, Christine, Zhang, Tianhong, Rotstein, Sergio, Hughes, Jason D., Caffrey, Daniel R., Stanton, Robert

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SLC46 Family Transporters Facilitate Cytosolic Innate Immune Recognition of Monomeric Peptidoglycans von Paik, Donggi, Monahan, Amanda, Caffrey, Daniel R, Elling, Roland, Goldman, William E, Silverman, Neal

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Structure-based maximal affinity model predicts small-molecule druggability von Cheng, Alan C, Coleman, Ryan G, Smyth, Kathleen T, Cao, Qing, Soulard, Patricia, Caffrey, Daniel R, Salzberg, Anna C, Huang, Enoch S

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Lymphocyte crosstalk is required for monocyte-intrinsic trained immunity to Plasmodium falciparum von Crabtree, Juliet N, Caffrey, Daniel R, de Souza Silva, Leandro, Kurt-Jones, Evelyn A, Dobbs, Katherine, Dent, Arlene, Fitzgerald, Katherine A, Golenbock, Douglas T

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Influenza virus drug resistance: a time-sampled population genetics perspective von Foll, Matthieu, Poh, Yu-Ping, Renzette, Nicholas, Ferrer-Admetlla, Anna, Bank, Claudia, Shim, Hyunjin, Malaspinas, Anna-Sapfo, Ewing, Gregory, Liu, Ping, Wegmann, Daniel, Caffrey, Daniel R, Zeldovich, Konstantin B, Bolon, Daniel N, Wang, Jennifer P, Kowalik, Timothy F, Schiffer, Celia A, Finberg, Robert W, Jensen, Jeffrey D

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Inflammasome-derived cytokine IL18 suppresses amyloid-induced seizures in Alzheimer-prone mice von Tzeng, Te-Chen, Hasegawa, Yuto, Iguchi, Risa, Cheung, Amy, Caffrey, Daniel R., Thatcher, Elizabeth Jeanne, Mao, Wenjie, Germain, Gail, DePaula Tamburro, Nelsy, Okabe, Shigeo, Heneka, Michael T., Latz, Eicke, Futai, Kensuke, Golenbock, Douglas T.

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The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs von Kim, Eugene Z, Wespiser, Adam R, Caffrey, Daniel R

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siRNA off-target effects can be reduced at concentrations that match their individual potency von Caffrey, Daniel R, Zhao, Juan, Song, Zhili, Schaffer, Michael E, Haney, Steven A, Subramanian, Romesh R, Seymour, Albert B, Hughes, Jason D

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Long noncoding RNAs in innate and adaptive immunity von Fitzgerald, Katherine A, Caffrey, Daniel R

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Are protein–protein interfaces more conserved in sequence than the rest of the protein surface? von Caffrey, Daniel R., Somaroo, Shyamal, Hughes, Jason D., Mintseris, Julian, Huang, Enoch S.

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Distinct Cellular Origins for Serotonin-Expressing and Enterochromaffin-like Cells in the Gastric Corpus von Li, Hui Joyce, Johnston, Brian, Aiello, Daniel, Caffrey, Daniel R, Giel–Moloney, Maryann, Rindi, Guido, Leiter, Andrew B

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Evolution of the Influenza A Virus Genome during Development of Oseltamivir Resistance In Vitro von Renzette, Nicholas, Caffrey, Daniel R, Zeldovich, Konstantin B, Liu, Ping, Gallagher, Glen R, Aiello, Daniel, Porter, Alyssa J, Kurt-Jones, Evelyn A, Bolon, Daniel N, Poh, Yu-Ping, Jensen, Jeffrey D, Schiffer, Celia A, Kowalik, Timothy F, Finberg, Robert W, Wang, Jennifer P

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PFAAT version 2.0: a tool for editing, annotating, and analyzing multiple sequence alignments von Caffrey, Daniel R, Dana, Paul H, Mathur, Vidhya, Ocano, Marco, Hong, Eun-Jong, Wang, Yaoyu E, Somaroo, Shyamal, Caffrey, Brian E, Potluri, Shobha, Huang, Enoch S

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Cutting Edge: A Natural Antisense Transcript, AS-IL1α, Controls Inducible Transcription of the Proinflammatory Cytokine IL-1α von Chan, Jennie, Atianand, Maninjay, Jiang, Zhaozhao, Carpenter, Susan, Aiello, Daniel, Elling, Roland, Fitzgerald, Katherine A, Caffrey, Daniel R

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RNA Helicase Signaling Is Critical for Type I Interferon Production and Protection against Rift Valley Fever Virus during Mucosal Challenge von Ermler, Megan E, Yerukhim, Ekaterina, Schriewer, Jill, Schattgen, Stefan, Traylor, Zachary, Wespiser, Adam R, Caffrey, Daniel R, Chen, Zhijian J, King, Charles H, Gale, Jr, Michael, Colonna, Marco, Fitzgerald, Katherine A, Buller, R Mark L, Hise, Amy G

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Genomic insights into the Ixodes scapularis tick vector of Lyme disease von Gulia-Nuss, Monika, Nuss, Andrew B., Meyer, Jason M., Sonenshine, Daniel E., Roe, R. Michael, Waterhouse, Robert M., Sattelle, David B., de la Fuente, José, Ribeiro, Jose M., Megy, Karine, Thimmapuram, Jyothi, Miller, Jason R., Walenz, Brian P., Koren, Sergey, Hostetler, Jessica B., Thiagarajan, Mathangi, Joardar, Vinita S., Hannick, Linda I., Bidwell, Shelby, Hammond, Martin P., Young, Sarah, Zeng, Qiandong, Abrudan, Jenica L., Almeida, Francisca C., Ayllón, Nieves, Bhide, Ketaki, Bissinger, Brooke W., Bonzon-Kulichenko, Elena, Buckingham, Steven D., Caffrey, Daniel R., Caimano, Melissa J., Croset, Vincent, Driscoll, Timothy, Gilbert, Don, Gillespie, Joseph J., Giraldo-Calderón, Gloria I., Grabowski, Jeffrey M., Jiang, David, Khalil, Sayed M. S., Kim, Donghun, Kocan, Katherine M., Koči, Juraj, Kuhn, Richard J., Kurtti, Timothy J., Lees, Kristin, Lang, Emma G., Kennedy, Ryan C., Kwon, Hyeogsun, Perera, Rushika, Qi, Yumin, Radolf, Justin D., Sakamoto, Joyce M., Sánchez-Gracia, Alejandro, Severo, Maiara S., Silverman, Neal, Šimo, Ladislav, Tojo, Marta, Tornador, Cristian, Van Zee, Janice P., Vázquez, Jesús, Vieira, Filipe G., Villar, Margarita, Wespiser, Adam R., Yang, Yunlong, Zhu, Jiwei, Arensburger, Peter, Pietrantonio, Patricia V., Barker, Stephen C., Shao, Renfu, Zdobnov, Evgeny M., Hauser, Frank, Grimmelikhuijzen, Cornelis J. P., Park, Yoonseong, Rozas, Julio, Benton, Richard, Pedra, Joao H. F., Nelson, David R., Unger, Maria F., Tubio, Jose M. C., Tu, Zhijian, Robertson, Hugh M., Shumway, Martin, Sutton, Granger, Wortman, Jennifer R., Lawson, Daniel, Wikel, Stephen K., Nene, Vishvanath M., Fraser, Claire M., Collins, Frank H., Birren, Bruce, Nelson, Karen E., Caler, Elisabet, Hill, Catherine A.

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