Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals von Policarpo, Maxime, Fumey, Julien, Lafargeas, Philippe, Naquin, Delphine, Thermes, Claude, Naville, Magali, Dechaud, Corentin, Volff, Jean-Nicolas, Cabau, Cedric, Klopp, Christophe, Møller, Peter Rask, Bernatchez, Louis, García-Machado, Erik, Rétaux, Sylvie, Casane, Didier

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Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flaves... von Feron, Romain, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Roques, Céline, Bouchez, Olivier, Eché, Camille, Valière, Sophie, Donnadieu, Cécile, Haffray, Pierrick, Bestin, Anastasia, Morvezen, Romain, Acloque, Hervé, Euclide, Peter T., Wen, Ming, Jouano, Elodie, Schartl, Manfred, Postlethwait, John H., Schraidt, Claire, Christie, Mark R., Larson, Wesley A., Herpin, Amaury, Guiguen, Yann

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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization von Du, Kang, Stöck, Matthias, Kneitz, Susanne, Klopp, Christophe, Woltering, Joost M., Adolfi, Mateus Contar, Feron, Romain, Prokopov, Dmitry, Makunin, Alexey, Kichigin, Ilya, Schmidt, Cornelia, Fischer, Petra, Kuhl, Heiner, Wuertz, Sven, Gessner, Jörn, Kloas, Werner, Cabau, Cédric, Iampietro, Carole, Parrinello, Hugues, Tomlinson, Chad, Journot, Laurent, Postlethwait, John H., Braasch, Ingo, Trifonov, Vladimir, Warren, Wesley C., Meyer, Axel, Guiguen, Yann, Schartl, Manfred

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Sex chromosome and sex locus characterization in goldfish, Carassius auratus (Linnaeus, 1758) von Wen, Ming, Feron, Romain, Pan, Qiaowei, Guguin, Justine, Jouanno, Elodie, Herpin, Amaury, Klopp, Christophe, Cabau, Cedric, Zahm, Margot, Parrinello, Hugues, Journot, Laurent, Burgess, Shawn M, Omori, Yoshihiro, Postlethwait, John H, Schartl, Manfred, Guiguen, Yann

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A duplicated copy of id2b is an unusual sex-determining candidate gene on the Y chromosome of arapaima (Arapaima gigas) von Adolfi, Mateus C., Du, Kang, Kneitz, Susanne, Cabau, Cédric, Zahm, Margot, Klopp, Christophe, Feron, Romain, Paixão, Rômulo V., Varela, Eduardo S., de Almeida, Fernanda L., de Oliveira, Marcos A., Nóbrega, Rafael H., Lopez-Roques, Céline, Iampietro, Carole, Lluch, Jérôme, Kloas, Werner, Wuertz, Sven, Schaefer, Fabian, Stöck, Matthias, Guiguen, Yann, Schartl, Manfred

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Evolution of gene expression after whole‐genome duplication: New insights from the spotted gar genome von Pasquier, Jeremy, Braasch, Ingo, Batzel, Peter, Cabau, Cedric, Montfort, Jérome, Nguyen, Thaovi, Jouanno, Elodie, Berthelot, Camille, Klopp, Christophe, Journot, Laurent, Postlethwait, John H., Guiguen, Yann, Bobe, Julien

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Multi-species annotation of transcriptome and chromatin structure in domesticated animals von Foissac, Sylvain, Djebali, Sarah, Munyard, Kylie, Vialaneix, Nathalie, Rau, Andrea, Muret, Kevin, Esquerré, Diane, Zytnicki, Matthias, Derrien, Thomas, Bardou, Philippe, Blanc, Fany, Cabau, Cédric, Crisci, Elisa, Dhorne-Pollet, Sophie, Drouet, Françoise, Faraut, Thomas, Gonzalez, Ignacio, Goubil, Adeline, Lacroix-Lamandé, Sonia, Laurent, Fabrice, Marthey, Sylvain, Marti-Marimon, Maria, Momal-Leisenring, Raphaelle, Mompart, Florence, Quéré, Pascale, Robelin, David, Cristobal, Magali San, Tosser-Klopp, Gwenola, Vincent-Naulleau, Silvia, Fabre, Stéphane, Pinard-Van der Laan, Marie-Hélène, Klopp, Christophe, Tixier-Boichard, Michèle, Acloque, Hervé, Lagarrigue, Sandrine, Giuffra, Elisabetta

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Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae von Kuhl, Heiner, Euclide, Peter T, Klopp, Christophe, Cabau, Cédric, Zahm, Margot, Lopez-Roques, Céline, Iampietro, Carole, Kuchly, Claire, Donnadieu, Cécile, Feron, Romain, Parrinello, Hugues, Poncet, Charles, Jaffrelo, Lydia, Confolent, Carole, Wen, Ming, Herpin, Amaury, Jouanno, Elodie, Bestin, Anastasia, Haffray, Pierrick, Morvezen, Romain, de Almeida, Taina Rocha, Lecocq, Thomas, Schaerlinger, Bérénice, Chardard, Dominique, Żarski, Daniel, Larson, Wesley A, Postlethwait, John H, Timirkhanov, Serik, Kloas, Werner, Wuertz, Sven, Stöck, Matthias, Guiguen, Yann

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Design and characterization of a 52K SNP chip for goats von Tosser-Klopp, Gwenola, Bardou, Philippe, Bouchez, Olivier, Cabau, Cédric, Crooijmans, Richard, Dong, Yang, Donnadieu-Tonon, Cécile, Eggen, André, Heuven, Henri C M, Jamli, Saadiah, Jiken, Abdullah Johari, Klopp, Christophe, Lawley, Cynthia T, McEwan, John, Martin, Patrice, Moreno, Carole R, Mulsant, Philippe, Nabihoudine, Ibouniyamine, Pailhoux, Eric, Palhière, Isabelle, Rupp, Rachel, Sarry, Julien, Sayre, Brian L, Tircazes, Aurélie, Jun Wang, Wang, Wen, Zhang, Wenguang

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An overview of gene expression dynamics during early ovarian folliculogenesis: specificity of follicular compartments and bi-directional dialog von Bonnet, Agnes, Cabau, Cedric, Bouchez, Olivier, Sarry, Julien, Marsaud, Nathalie, Foissac, Sylvain, Woloszyn, Florent, Mulsant, Philippe, Mandon-Pepin, Beatrice

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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family von Wen, Ming, Pan, Qiaowei, Jouanno, Elodie, Montfort, Jerome, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Iampietro, Carole, Roques, Céline, Bouchez, Olivier, Castinel, Adrien, Donnadieu, Cécile, Parrinello, Hugues, Poncet, Charles, Belmonte, Elodie, Gautier, Véronique, Avarre, Jean‐Christophe, Dugue, Remi, Gustiano, Rudhy, Hà, Trần Thị Thúy, Campet, Marc, Sriphairoj, Kednapat, Ribolli, Josiane, Almeida, Fernanda L., Desvignes, Thomas, Postlethwait, John H., Floi Bucao, Christabel, Robinson‐Rechavi, Marc, Bobe, Julien, Herpin, Amaury, Guiguen, Yann, DeWoody, Andrew

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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database von Pasquier, Jeremy, Cabau, Cédric, Nguyen, Thaovi, Jouanno, Elodie, Severac, Dany, Braasch, Ingo, Journot, Laurent, Pontarotti, Pierre, Klopp, Christophe, Postlethwait, John H, Guiguen, Yann, Bobe, Julien

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IMpRH Server: an RH mapping server available on the Web von Milan, Denis, Hawken, Rachel, Cabau, Cédric, Leroux, Sophie, Genet, Carine, Lahbib, Yvette, Tosser, Gwenola, Robic, Annie, Hatey, Francois, Alexander, Lee, Beattie, Craig, Schook, Larry, Yerle, Martine, Gellin, Joël

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Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail von Frésard, Laure, Leroux, Sophie, Dehais, Patrice, Servin, Bertrand, Gilbert, Hélène, Bouchez, Olivier, Klopp, Christophe, Cabau, Cédric, Vignoles, Florence, Feve, Katia, Ricros, Amélie, Gourichon, David, Diot, Christian, Richard, Sabine, Leterrier, Christine, Beaumont, Catherine, Vignal, Alain, Minvielle, Francis, Pitel, Frédérique

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Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications von Parey, Elise, Louis, Alexandra, Cabau, Cédric, Guiguen, Yann, Roest Crollius, Hugues, Berthelot, Camille

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An Immune-Related Gene Evolved into the Master Sex-Determining Gene in Rainbow Trout, Oncorhynchus mykiss von Yano, Ayaka, Guyomard, René, Nicol, Barbara, Jouanno, Elodie, Quillet, Edwige, Klopp, Christophe, Cabau, Cédric, Bouchez, Olivier, Fostier, Alexis, Guiguen, Yann

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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates von Berthelot, Camille, Brunet, Frédéric, Chalopin, Domitille, Juanchich, Amélie, Bernard, Maria, Noël, Benjamin, Bento, Pascal, Da Silva, Corinne, Labadie, Karine, Alberti, Adriana, Aury, Jean-Marc, Louis, Alexandra, Dehais, Patrice, Bardou, Philippe, Montfort, Jérôme, Klopp, Christophe, Cabau, Cédric, Gaspin, Christine, Thorgaard, Gary H., Boussaha, Mekki, Quillet, Edwige, Guyomard, René, Galiana, Delphine, Bobe, Julien, Volff, Jean-Nicolas, Genêt, Carine, Wincker, Patrick, Jaillon, Olivier, Crollius, Hugues Roest, Guiguen, Yann

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Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies von Cabau, Cédric, Escudié, Frédéric, Djari, Anis, Guiguen, Yann, Bobe, Julien, Klopp, Christophe

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Detection of DNA methylation signatures through the lens of genomic imprinting von Hubert, Jean-Noël, Iannuccelli, Nathalie, Cabau, Cédric, Jacomet, Eva, Billon, Yvon, Serre, Rémy-Félix, Vandecasteele, Céline, Donnadieu, Cécile, Demars, Julie

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Gene expression profiling to identify eggshell proteins involved in physical defense of the chicken egg von Jonchère, Vincent, Réhault-Godbert, Sophie, Hennequet-Antier, Christelle, Cabau, Cédric, Sibut, Vonick, Cogburn, Larry A, Nys, Yves, Gautron, Joel

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