Single-cell genomics in plants: current state, future directions, and hurdles to overcome von Cuperus, Josh T

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Evolution and Functional Diversification of MIRNA Genes von Cuperus, Josh T., Fahlgren, Noah, Carrington, James C.

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Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana von Jean-Baptiste, Ken, McFaline-Figueroa, José L, Alexandre, Cristina M, Dorrity, Michael W, Saunders, Lauren, Bubb, Kerry L, Trapnell, Cole, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T

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Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences von Cuperus, Josh T, Groves, Benjamin, Kuchina, Anna, Rosenberg, Alexander B, Jojic, Nebojsa, Fields, Stanley, Seelig, Georg

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The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution von Dorrity, Michael W., Alexandre, Cristina M., Hamm, Morgan O., Vigil, Anna-Lena, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T.

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Identification of Plant Enhancers and Their Constituent Elements by STARR-seq in Tobacco Leaves[OPEN] von Jores, Tobias, Tonnies, Jackson, Dorrity, Michael W., Cuperus, Josh T., Fields, Stanley, Queitsch, Christine

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Frontiers and techniques in plant gene regulation von Jores, Tobias, Hamm, Morgan, Cuperus, Josh T., Queitsch, Christine

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A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana von Gala, Hardik P, Lanctot, Amy, Jean-Baptiste, Ken, Guiziou, Sarah, Chu, Jonah C, Zemke, Joseph E, George, Wesley, Queitsch, Christine, Cuperus, Josh T, Nemhauser, Jennifer L

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Impact on splicing in Saccharomyces cerevisiae of random 50-base sequences inserted into an intron von Perchlik, Molly, Sasse, Alexander, Mostafavi, Sara, Fields, Stanley, Cuperus, Josh T

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New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis von Carbonell, Alberto, Takeda, Atsushi, Fahlgren, Noah, Johnson, Simon C., Cuperus, Josh T., Carrington, James C.

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Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants von Carbonell, Alberto, Fahlgren, Noah, Garcia-Ruiz, Hernan, Gilbert, Kerrigan B., Montgomery, Taiowa A., Nguyen, Tammy, Cuperus, Josh T., Carrington, James C.

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Editorial overview: Technology development as a driver of biological discovery von Cuperus, Josh T, Queitsch, Christine

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Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans von Morton, Elizabeth A, Hall, Ashley N, Cuperus, Josh T, Queitsch, Christine

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Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters von Jores, Tobias, Tonnies, Jackson, Wrightsman, Travis, Buckler, Edward S., Cuperus, Josh T., Fields, Stanley, Queitsch, Christine

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Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis von Carrington, James C, Fahlgren, Noah, Cuperus, Josh T, Carbonell, Alberto, Garcia-Ruiz, Hernan, Gilbert, Sunny D, Burke, Russell T, Montgomery, Taiowa A, Takeda, Atsushi, Sullivan, Christopher M

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Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation von Montgomery, Taiowa A., Howell, Miya D., Cuperus, Josh T., Li, Dawei, Hansen, Jesse E., Alexander, Amanda L., Chapman, Elisabeth J., Fahlgren, Noah, Allen, Edwards, Carrington, James C.

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The promise of single-cell genomics in plants von McFaline-Figueroa, José L, Trapnell, Cole, Cuperus, Josh T

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Plant enhancers exhibit both cooperative and additive interactions among their functional elements von Jores, Tobias, Tonnies, Jackson, Mueth, Nicholas A, Romanowski, Andrés, Fields, Stanley, Cuperus, Josh T, Queitsch, Christine

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Effects of sequence motifs in the yeast 3' untranslated region determined from massively parallel assays of random sequences von Savinov, Andrew, Brandsen, Benjamin M, Angell, Brooke E, Cuperus, Josh T, Fields, Stanley

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Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability von Gorjifard, Sayeh, Jores, Tobias, Tonnies, Jackson, Mueth, Nicholas A., Bubb, Kerry, Wrightsman, Travis, Buckler, Edward S., Fields, Stanley, Cuperus, Josh T., Queitsch, Christine

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