Chromosome evolution at the origin of the ancestral vertebrate genome von Sacerdot, Christine, Louis, Alexandra, Bon, Céline, Berthelot, Camille, Roest Crollius, Hugues

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Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing von Nguyen, Nga Thi Thuy, Vincens, Pierre, Roest Crollius, Hugues, Louis, Alexandra

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Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors von Nguyen, Nga Thi Thuy, Vincens, Pierre, Dufayard, Jean François, Roest Crollius, Hugues, Louis, Alexandra

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ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates von Dardaillon, Justine, Dauga, Delphine, Simion, Paul, Faure, Emmanuel, Onuma, Takeshi A, DeBiasse, Melissa B, Louis, Alexandra, Nitta, Kazuhiro R, Naville, Magali, Besnardeau, Lydia, Reeves, Wendy, Wang, Kai, Fagotto, Marie, Guéroult-Bellone, Marion, Fujiwara, Shigeki, Dumollard, Rémi, Veeman, Michael, Volff, Jean-Nicolas, Roest Crollius, Hugues, Douzery, Emmanuel, Ryan, Joseph F, Davidson, Bradley, Nishida, Hiroki, Dantec, Christelle, Lemaire, Patrick

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Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes von Muffato, Matthieu, Louis, Alexandra, Poisnel, Charles-Edouard, Crollius, Hugues Roest

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CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex von Saulière, Jérôme, Murigneux, Valentine, Wang, Zhen, Marquenet, Emélie, Barbosa, Isabelle, Le Tonquèze, Olivier, Audic, Yann, Paillard, Luc, Crollius, Hugues Roest, Le Hir, Hervé

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Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation von Chica, Claudia, Louis, Alexandra, Roest Crollius, Hugues, Colot, Vincent, Roudier, François

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High precision detection of conserved segments from synteny blocks von Lucas, Joseph Mex, Roest Crollius, Hugues

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Genomicus: five genome browsers for comparative genomics in eukaryota von Louis, Alexandra, Muffato, Matthieu, Roest Crollius, Hugues

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Identification and functional modelling of plausibly causative cis-regulatory variants in a highly-selected cohort with X-linked intellectual disability von Bengani, Hemant, Grozeva, Detelina, Moyon, Lambert, Bhatia, Shipra, Louros, Susana R., Hope, Jilly, Jackson, Adam, Prendergast, James G., Owen, Liusaidh J., Naville, Magali, Rainger, Jacqueline, Grimes, Graeme, Halachev, Mihail, Murphy, Laura C., Spasic-Boskovic, Olivera, van Heyningen, Veronica, Kind, Peter, Abbott, Catherine M., Osterweil, Emily, Raymond, F. Lucy, Crollius, Hugues Roest, FitzPatrick, David R.

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SCORPiOs, a Novel Method to Reconstruct Gene Phylogenies in the Context of a Known WGD Event von Parey, Elise, Roest Crollius, Hugues, Berthelot, Camille

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Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications von Parey, Elise, Louis, Alexandra, Cabau, Cédric, Guiguen, Yann, Roest Crollius, Hugues, Berthelot, Camille

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How much does the amphioxus genome represent the ancestor of chordates? von Louis, Alexandra, Roest Crollius, Hugues, Robinson-Rechavi, Marc

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Solving an enigma in the tree of life, at the origins of teleost fishes von Parey, Elise, Berthelot, Camille, Roest Crollius, Hugues, Guiguen, Yann

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Understanding Brassicaceae evolution through ancestral genome reconstruction von Murat, Florent, Louis, Alexandra, Maumus, Florian, Armero, Alix, Cooke, Richard, Quesneville, Hadi, Roest Crollius, Hugues, Salse, Jerome

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On the importance of evolutionary constraint for regulatory sequence identification von Giudicelli, Francois, Crollius, Hugues Roest

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Genome structures resolve the early diversification of teleost fishes von Parey, Elise, Louis, Alexandra, Montfort, Jerome, Bouchez, Olivier, Roques, Céline, Iampietro, Carole, Lluch, Jerome, Castinel, Adrien, Donnadieu, Cécile, Desvignes, Thomas, Floi Bucao, Christabel, Jouanno, Elodie, Wen, Ming, Mejri, Sahar, Dirks, Ron, Jansen, Hans, Henkel, Christiaan, Chen, Wei-Jen, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Thompson, Andrew W, Robinson-Rechavi, Marc, Braasch, Ingo, Lecointre, Guillaume, Bobe, Julien, Postlethwait, John H, Berthelot, Camille, Roest Crollius, Hugues, Guiguen, Yann

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Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence von Vazquez, Marie-Paule, Fantes, Judy A, Vekemans, Michel, Holder-Espinasse, Muriel, Gordon, Christopher T, Kilpatrick, Nicky, Perry, Paul, Heaney, Simon, Thomas, Sophie, Ayuso, Carmen, Ramsay, Jacqueline, Lees, Melissa M, Crollius, Hugues Roest, Farlie, Peter G, Abadie, Véronique, Temple, I Karen, Lyonnet, Stanislas, Amiel, Jeanne, Fisher, Malcolm, Thomas, Paul, Kleinjan, Dirk-Jan, Etchevers, Heather C, Benko, Sabina, Jamshidi, Negar, Munnich, Arnold, Pelet, Anna, Essafi, Abdelkader, McBride, David, FitzPatrick, David R, Golzio, Christelle, Picard, Arnaud, Hastie, Nicholas D

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Genome structures resolve the early diversification of teleost fishes von Parey, Elise, Louis, Alexandra, Montfort, Jérôme, Bouchez, Olivier, Roques, Céline, Iampietro, Carole, Lluch, Jerome, Castinel, Adrien, Donnadieu, Cécile, Desvignes, Thomas, Floi Bucao, Christabel, Jouanno, Elodie, Wen, Ming, Mejri, Sahar, Dirks, Ron, Jansen, Hans, Henkel, Christiaan, Chen, Wei-Jen, Zahm, Margot, Cabau, Cédric, Klopp, Christophe, Thompson, Andrew, Robinson-Rechavi, Marc, Braasch, Ingo, Lecointre, Guillaume, Bobe, Julien, Postlethwait, John, Berthelot, Camille, Roest Crollius, Hugues, Guiguen, Yann

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GenomicusPlants: a web resource to study genome evolution in flowering plants von Louis, Alexandra, Murat, Florent, Salse, Jérôme, Crollius, Hugues Roest

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