Molecular evolution and signatures of selective pressures on Bos, focusing on the Nelore breed (Bos indicus) von Cortez, Thainá, Montenegro, Horácio, Coutinho, Luiz L, Regitano, Luciana C A, Andrade, Sónia C S

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Size of the Ovulatory Follicle Dictates Spatial Differences in the Oviductal Transcriptome in Cattle von Gonella-Diaza, Angela María, Andrade, Sónia Cristina da Silva, Sponchiado, Mariana, Pugliesi, Guilherme, Mesquita, Fernando Silveira, Van Hoeck, Veerle, Strefezzi, Ricardo de Francisco, Gasparin, Gustavo R, Coutinho, Luiz L, Binelli, Mario

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Putative regulatory factors associated with intramuscular fat content von Cesar, Aline S M, Regitano, Luciana C A, Koltes, James E, Fritz-Waters, Eric R, Lanna, Dante P D, Gasparin, Gustavo, Mourão, Gerson B, Oliveira, Priscila S N, Reecy, James M, Coutinho, Luiz L

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Gene co-expression networks associated with carcass traits reveal new pathways for muscle and fat deposition in Nelore cattle von Silva-Vignato, Bárbara, Coutinho, Luiz L, Poleti, Mirele D, Cesar, Aline S M, Moncau, Cristina T, Regitano, Luciana C A, Balieiro, Júlio C C

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Analysis of copy number variations among diverse cattle breeds von Liu, George E, Hou, Yali, Zhu, Bin, Cardone, Maria Francesca, Jiang, Lu, Cellamare, Angelo, Mitra, Apratim, Alexander, Leeson J, Coutinho, Luiz L, Dell'Aquila, Maria Elena, Gasbarre, Lou C, Lacalandra, Gianni, Li, Robert W, Matukumalli, Lakshmi K, Nonneman, Dan, Smith, Tim P.L, Sonstegard, Tad S, Van Tassell, Curt P, McDaneld, Tara G, Keele, John W

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Comparative muscle transcriptome associated with carcass traits of Nellore cattle von Silva-Vignato, Bárbara, Coutinho, Luiz L, Cesar, Aline S M, Poleti, Mirele D, Regitano, Luciana C A, Balieiro, Júlio C C

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Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits von Cesar, Aline S M, Regitano, Luciana C A, Reecy, James M, Poleti, Mirele D, Oliveira, Priscila S N, de Oliveira, Gabriella B, Moreira, Gabriel C M, Mudadu, Maurício A, Tizioto, Polyana C, Koltes, James E, Fritz-Waters, Elyn, Kramer, Luke, Garrick, Dorian, Beiki, Hamid, Geistlinger, Ludwig, Mourão, Gerson B, Zerlotini, Adhemar, Coutinho, Luiz L

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Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens von Moreira, Gabriel Costa Monteiro, Salvian, Mayara, Boschiero, Clarissa, Cesar, Aline Silva Mello, Reecy, James M, Godoy, Thaís Fernanda, Ledur, Mônica Corrêa, Garrick, Dorian, Mourão, Gerson Barreto, Coutinho, Luiz L

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Mutation dynamics of CpG dinucleotides during a recent event of vertebrate diversification von Pértille, Fábio, Da Silva, Vinicius H., Johansson, Anna M., Lindström, Tom, Wright, Dominic, Coutinho, Luiz L., Jensen, Per, Guerrero-Bosagna, Carlos

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Network analysis uncovers putative genes affecting resistance to tick infestation in Braford cattle skin von Moré, Daniela D, Cardoso, Fernando F, Mudadu, Maurício A, Malagó-Jr, Wilson, Gulias-Gomes, Claudia C, Sollero, Bruna P, Ibelli, Adriana M G, Coutinho, Luiz L, Regitano, Luciana C A

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Integrative analysis of microRNAs and mRNAs revealed regulation of composition and metabolism in Nelore cattle von Oliveira, Gabriella B, Regitano, Luciana C A, Cesar, Aline S M, Reecy, James M, Degaki, Karina Y, Poleti, Mirele D, Felício, Andrezza M, Koltes, James E, Coutinho, Luiz L

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MicroRNA transcriptome profiles during swine skeletal muscle development von McDaneld, Tara G, Smith, Timothy P L, Doumit, Matthew E, Miles, Jeremy R, Coutinho, Luiz L, Sonstegard, Tad S, Matukumalli, Lakshmi K, Nonneman, Dan J, Wiedmann, Ralph T

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Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics von Decker, Jared E, Pires, J. Chris, Conant, Gavin C, McKay, Stephanie D, Heaton, Michael P, Chen, Kefei, Cooper, Alan, Vilkki, Johanna, Seabury, Christopher M, Caetano, Alexandre R, Johnson, Gary S, Brenneman, Rick A, Hanotte, Olivier, Eggert, Lori S, Wiener, Pamela, Kim, Jong-Joo, Kim, Kwan Suk, Sonstegard, Tad S, Van Tassell, Curt P, Neibergs, Holly L, McEwan, John C, Brauning, Rudiger, Coutinho, Luiz L, Babar, Masroor E, Wilson, Gregory A, McClure, Matthew C, Rolf, Megan M, Kim, JaeWoo, Schnabel, Robert D, Taylor, Jeremy F

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The transcriptome signature of the receptive bovine uterus determined at early gestation von Binelli, Mario, Scolari, Saara C, Pugliesi, Guilherme, Van Hoeck, Veerle, Gonella-Diaza, Angela M, Andrade, Sónia C S, Gasparin, Gustavo R, Coutinho, Luiz L

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Stool and Ruminal Microbiome Components Associated With Methane Emission and Feed Efficiency in Nelore Beef Cattle von Andrade, Bruno G N, Bressani, Flavia A, Cuadrat, Rafael R C, Cardoso, Tainã F, Malheiros, Jessica M, de Oliveira, Priscila S N, Petrini, Juliana, Mourão, Gerson B, Coutinho, Luiz L, Reecy, James M, Koltes, James E, Neto, Adhemar Z, R de Medeiros, Sérgio, Berndt, Alexandre, Palhares, Julio C P, Afli, Haithem, Regitano, Luciana C A

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Potential Biomarkers for Feed Efficiency-Related Traits in Nelore Cattle Identified by Co-expression Network and Integrative Genomics Analyses von de Lima, Andressa O, Koltes, James E, Diniz, Wellison J S, de Oliveira, Priscila S N, Cesar, Aline S M, Tizioto, Polyana C, Afonso, Juliana, de Souza, Marcela M, Petrini, Juliana, Rocha, Marina I P, Cardoso, Tainã F, Neto, Adhemar Zerlotini, Coutinho, Luiz L, Mourão, Gerson B, Regitano, Luciana C A

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Detection of Co-expressed Pathway Modules Associated With Mineral Concentration and Meat Quality in Nelore Cattle von Diniz, Wellison J S, Mazzoni, Gianluca, Coutinho, Luiz L, Banerjee, Priyanka, Geistlinger, Ludwig, Cesar, Aline S M, Bertolini, Francesca, Afonso, Juliana, de Oliveira, Priscila S N, Tizioto, Polyana C, Kadarmideen, Haja N, Regitano, Luciana C A

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Co-Expression Networks Reveal Potential Regulatory Roles of miRNAs in Fatty Acid Composition of Nelore Cattle von de Oliveira, Priscila S N, Coutinho, Luiz L, Cesar, Aline S M, Diniz, Wellison J da Silva, de Souza, Marcela M, Andrade, Bruno G, Koltes, James E, Mourão, Gerson B, Zerlotini, Adhemar, Reecy, James M, Regitano, Luciana C A

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The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen von Andrade, Bruno G N, Bressani, Flavia A, Cuadrat, Rafael R C, Tizioto, Polyana C, de Oliveira, Priscila S N, Mourão, Gerson B, Coutinho, Luiz L, Reecy, James M, Koltes, James E, Walsh, Paul, Berndt, Alexandre, Palhares, Julio C P, Regitano, Luciana C A

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Sex Determination Using RNA-Sequencing Analyses in Early Prenatal Pig Development von Teixeira, Susana A, Ibelli, Adriana M G, Cantão, Maurício E, Oliveira, Haniel C de, Ledur, Mônica C, Peixoto, Jane de O, Marques, Daniele B D, Costa, Karine A, Coutinho, Luiz L, Guimarães, Simone E F

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