Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses von Chiappinelli, Katherine B., Strissel, Pamela L., Desrichard, Alexis, Li, Huili, Henke, Christine, Akman, Benjamin, Hein, Alexander, Rote, Neal S., Cope, Leslie M., Snyder, Alexandra, Makarov, Vladimir, Buhu, Sadna, Slamon, Dennis J., Wolchok, Jedd D., Pardoll, Drew M., Beckmann, Matthias W., Zahnow, Cynthia A., Merghoub, Taha, Chan, Timothy A., Baylin, Stephen B., Strick, Reiner

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Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses von Chiappinelli, Katherine B., Strissel, Pamela L., Desrichard, Alexis, Li, Huili, Henke, Christine, Akman, Benjamin, Hein, Alexander, Rote, Neal S., Cope, Leslie M., Snyder, Alexandra, Makarov, Vladimir, Budhu, Sadna, Slamon, Dennis J., Wolchok, Jedd D., Pardoll, Drew M., Beckmann, Matthias W., Zahnow, Cynthia A., Merghoub, Taha, Chan, Timothy A., Baylin, Stephen B., Strick, Reiner

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Exploring massive, genome scale datasets with the GenometriCorr package von Favorov, Alexander, Mularoni, Loris, Cope, Leslie M, Medvedeva, Yulia, Mironov, Andrey A, Makeev, Vsevolod J, Wheelan, Sarah J

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HMGA1 induces FGF19 to drive pancreatic carcinogenesis and stroma formation von Chia, Lionel, Wang, Bowen, Kim, Jung-Hyun, Luo, Li Z, Shuai, Shuai, Herrera, Iliana, Chen, Sophia Y, Li, Liping, Xian, Lingling, Huso, Tait, Heydarian, Mohammad, Reddy, Karen, Sung, Woo Jung, Ishiyama, Shun, Guo, Gongbo, Jaffee, Elizabeth, Zheng, Lei, Cope, Leslie M, Gabrielson, Kathy, Wood, Laura, Resar, Linda

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Methylomic Analysis of Ovarian Cancers Identifies Tumor-Specific Alterations Readily Detectable in Early Precursor Lesions von Pisanic, 2nd, Thomas R, Cope, Leslie M, Lin, Shiou-Fu, Yen, Ting-Tai, Athamanolap, Pornpat, Asaka, Ryoichi, Nakayama, Kentaro, Fader, Amanda N, Wang, Tza-Huei, Shih, Ie-Ming, Wang, Tian-Li

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Genome-wide Methylation Analysis Identifies Genes Specific to Breast Cancer Hormone Receptor Status and Risk of Recurrence von JO FACKLER, Mary, UMBRICHT, Christopher B, MARKS, Jeffrey, ETHIER, Stephen, GRAY, Joe W, WOLFF, Antonio C, COPE, Leslie M, SUKUMAR, Saraswati, WILLIAMS, Danielle, ARGANI, Pedram, CRUZ, Leigh-Ann, MERINO, Vanessa F, WEI WEN TEO, ZHE ZHANG, PENG HUANG, VISVANANTHAN, Kala

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Inhibiting DNA Methylation Causes an Interferon Response in Cancer via dsRNA Including Endogenous Retroviruses von Chiappinelli, Katherine B., Strissel, Pamela L., Desrichard, Alexis, Li, Huili, Henke, Christine, Akman, Benjamin, Hein, Alexander, Rote, Neal S., Cope, Leslie M., Snyder, Alexandra, Makarov, Vladimir, Budhu, Sadna, Slamon, Dennis J., Wolchok, Jedd D., Pardoll, Drew M., Beckmann, Matthias W., Zahnow, Cynthia A., Merghoub, Taha, Chan, Timothy A., Baylin, Stephen B., Strick, Reiner

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A benchmark for Affymetrix GeneChip expression measures von Cope, Leslie M., Irizarry, Rafael A., Jaffee, Harris A., Wu, Zhijin, Speed, Terence P.

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Do breast cancer cell lines provide a relevant model of the patient tumor methylome? von Cope, Leslie M, Fackler, Mary Jo, Lopez-Bujanda, Zoila, Wolff, Antonio C, Visvanathan, Kala, Gray, Joe W, Sukumar, Saraswati, Umbricht, Christopher B

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Single‐molecule epiallelic profiling of DNA derived from routinely collected Pap specimens for noninvasive detection of ovarian cancer von O'Keefe, Christine M., Zhao, Yang, Cope, Leslie M., Ho, Chih‐Ming, Fader, Amanda N., Stone, Rebecca, Ferris, James S., Beavis, Anna, Levinson, Kimberly, Wethington, Stephanie, Wang, Tian‐Li, Pisanic, Thomas R., Shih, Ie‐Ming, Wang, Tza‐Huei

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Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma von Noushmehr, Houtan, Weisenberger, Daniel J., Diefes, Kristin, Phillips, Heidi S., Pujara, Kanan, Berman, Benjamin P., Pan, Fei, Pelloski, Christopher E., Sulman, Erik P., Bhat, Krishna P., Verhaak, Roel G.W., Hoadley, Katherine A., Hayes, D. Neil, Perou, Charles M., Schmidt, Heather K., Ding, Li, Wilson, Richard K., Van Den Berg, David, Shen, Hui, Bengtsson, Henrik, Neuvial, Pierre, Cope, Leslie M., Buckley, Jonathan, Herman, James G., Baylin, Stephen B., Laird, Peter W., Aldape, Kenneth

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Automated and rapid detection of cancer in suspicious axillary lymph nodes in patients with breast cancer von Li, Juanjuan, Downs, Bradley M., Cope, Leslie M., Fackler, Mary Jo, Zhang, Xiuyun, Song, Chuan-gui, VandenBussche, Christopher, Zhang, Kejing, Han, Yong, Liu, Yufei, Tulac, Suzana, Venkatesan, Neesha, de Guzman, Timothy, Chen, Chuang, Lai, Edwin W., Yuan, Jingping, Sukumar, Saraswati

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Young age at diagnosis is associated with worse prognosis in the Luminal A breast cancer subtype: a retrospective institutional cohort study von Liu, Zhiyang, Sahli, Zeyad, Wang, Yongchun, Wolff, Antonio C., Cope, Leslie M., Umbricht, Christopher B.

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Monitoring of Serum DNA Methylation as an Early Independent Marker of Response and Survival in Metastatic Breast Cancer: TBCRC 005 Prospective Biomarker Study von Visvanathan, Kala, Fackler, MaryJo S, Zhang, Zhe, Lopez-Bujanda, Zoila A, Jeter, Stacie C, Sokoll, Lori J, Garrett-Mayer, Elizabeth, Cope, Leslie M, Umbricht, Christopher B, Euhus, David M, Forero, Andres, Storniolo, Anna M, Nanda, Rita, Lin, Nancy U, Carey, Lisa A, Ingle, James N, Sukumar, Saraswati, Wolff, Antonio C

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Summaries of Affymetrix GeneChip probe level data von Irizarry, Rafael A., Bolstad, Benjamin M., Collin, Francois, Cope, Leslie M., Hobbs, Bridget, Speed, Terence P.

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Measuring DNA Copy Number Variation Using High-Density Methylation Microarrays von Cho, Soonweng, Kim, Hyun-Seok, Zeiger, Martha A, Umbricht, Christopher B, Cope, Leslie M

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Retrospective analysis of cancer-specific gene expression panel for thyroid fine needle aspiration specimens von Wang, Yongchun, McKelvey, Brittany A., Liu, Zhiyang, Rooper, Lisa, Cope, Leslie M., Zeiger, Martha A., Umbricht, Christopher B.

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DNA Methylation Markers for Breast Cancer Detection in the Developing World von Downs, Bradley M, Mercado-Rodriguez, Claudia, Cimino-Mathews, Ashley, Chen, Chuang, Yuan, Jing-Ping, Van Den Berg, Eunice, Cope, Leslie M, Schmitt, Fernando, Tse, Gary M, Ali, Syed Z, Meir-Levi, Danielle, Sood, Rupali, Li, Juanjuan, Richardson, Andrea L, Mosunjac, Marina B, Rizzo, Monica, Tulac, Suzana, Kocmond, Kriszten J, de Guzman, Timothy, Lai, Edwin W, Rhees, Brian, Bates, Michael, Wolff, Antonio C, Gabrielson, Edward, Harvey, Susan C, Umbricht, Christopher B, Visvanathan, Kala, Fackler, Mary Jo, Sukumar, Saraswati

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Methylated markers accurately distinguish primary central nervous system lymphomas (PCNSL) from other CNS tumors von Downs, Bradley M, Ding, Wanjun, Cope, Leslie M, Umbricht, Christopher B, Li, Wenge, He, Huihua, Ke, Xiaokang, Holdhoff, Matthias, Bettegowda, Chetan, Tao, Weiping, Sukumar, Saraswati

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Fecal Metabolome in Hmga1 Transgenic Mice with Polyposis: Evidence for Potential Screen for Early Detection of Precursor Lesions in Colorectal Cancer von Williams, Michael D, Xian, Lingling, Huso, Tait, Park, Jeong-Jin, Huso, David, Cope, Leslie M, Gang, David R, Siems, William F, Resar, Linda, Reeves, Raymond, Hill, Herbert H

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