Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA von Kelly, Brendan J, Gross, Robert, Bittinger, Kyle, Sherrill-Mix, Scott, Lewis, James D, Collman, Ronald G, Bushman, Frederic D, Li, Hongzhe

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Disordered microbial communities in the upper respiratory tract of cigarette smokers von Charlson, Emily S, Chen, Jun, Custers-Allen, Rebecca, Bittinger, Kyle, Li, Hongzhe, Sinha, Rohini, Hwang, Jennifer, Bushman, Frederic D, Collman, Ronald G

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Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract von CHARLSON, Emily S, BITTINGER, Kyle, HAAS, Andrew R, FITZGERALD, Ayannah S, FRANK, Ian, YADAV, Anjana, BUSHMAN, Frederic D, COLLMAN, Ronald G

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Administration of nucleoside-modified mRNA encoding broadly neutralizing antibody protects humanized mice from HIV-1 challenge von Pardi, Norbert, Secreto, Anthony J., Shan, Xiaochuan, Debonera, Fotini, Glover, Joshua, Yi, Yanjie, Muramatsu, Hiromi, Ni, Houping, Mui, Barbara L., Tam, Ying K., Shaheen, Farida, Collman, Ronald G., Karikó, Katalin, Danet-Desnoyers, Gwenn A., Madden, Thomas D., Hope, Michael J., Weissman, Drew

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Human caspase-4 mediates noncanonical inflammasome activation against gram-negative bacterial pathogens von Casson, Cierra N., Yu, Janet, Reyes, Valeria M., Taschuk, Frances O., Yadav, Anjana, Copenhaver, Alan M., Nguyen, Hieu T., Collman, Ronald G., Shin, Sunny

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Optimizing methods and dodging pitfalls in microbiome research von Kim, Dorothy, Hofstaedter, Casey E, Zhao, Chunyu, Mattei, Lisa, Tanes, Ceylan, Clarke, Erik, Lauder, Abigail, Sherrill-Mix, Scott, Chehoud, Christel, Kelsen, Judith, Conrad, Máire, Collman, Ronald G, Baldassano, Robert, Bushman, Frederic D, Bittinger, Kyle

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Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons von Sherrill-Mix, Scott, Hwang, Young, Roche, Aoife M., Glascock, Abigail, Weiss, Susan R., Li, Yize, Haddad, Leila, Deraska, Peter, Monahan, Caitlin, Kromer, Andrew, Graham-Wooten, Jevon, Taylor, Louis J., Abella, Benjamin S., Ganguly, Arupa, Collman, Ronald G., Van Duyne, Gregory D., Bushman, Frederic D.

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Innate Lymphoid Cells Promote Anatomical Containment of Lymphoid-Resident Commensal Bacteria von Sonnenberg, Gregory F., Monticelli, Laurel A., Alenghat, Theresa, Fung, Thomas C., Hutnick, Natalie A., Kunisawa, Jun, Shibata, Naoko, Grunberg, Stephanie, Sinha, Rohini, Zahm, Adam M., Tardif, Mélanie R., Sathaliyawala, Taheri, Kubota, Masaru, Farber, Donna L., Collman, Ronald G., Shaked, Abraham, Fouser, Lynette A., Weiner, David B., Tessier, Philippe A., Friedman, Joshua R., Kiyono, Hiroshi, Bushman, Frederic D., Chang, Kyong-Mi, Artis, David

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Supraphysiologic control over HIV-1 replication mediated by CD8 T cells expressing a re-engineered CD4-based chimeric antigen receptor von Leibman, Rachel S, Richardson, Max W, Ellebrecht, Christoph T, Maldini, Colby R, Glover, Joshua A, Secreto, Anthony J, Kulikovskaya, Irina, Lacey, Simon F, Akkina, Sarah R, Yi, Yanjie, Shaheen, Farida, Wang, Jianbin, Dufendach, Keith A, Holmes, Michael C, Collman, Ronald G, Payne, Aimee S, Riley, James L

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Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance von Merenstein, Carter, Bushman, Frederic D, Collman, Ronald G

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The Role of the Lung Microbiome in Health and Disease: A National Heart, Lung, and Blood Institute Workshop Report von HUANG, Yvonne J, CHARLSON, Emily S, COLLMAN, Ronald G, COLOMBINI-HATCH, Sandra, MARTINEZ, Fernando D, SENIOR, Robert M

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Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts von Charlson, Emily S, Bittinger, Kyle, Chen, Jun, Diamond, Joshua M, Li, Hongzhe, Collman, Ronald G, Bushman, Frederic D

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Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome von Merenstein, Carter, Liang, Guanxiang, Whiteside, Samantha A, Cobián-Güemes, Ana G, Merlino, Madeline S, Taylor, Louis J, Glascock, Abigail, Bittinger, Kyle, Tanes, Ceylan, Graham-Wooten, Jevon, Khatib, Layla A, Fitzgerald, Ayannah S, Reddy, Shantan, Baxter, Amy E, Giles, Josephine R, Oldridge, Derek A, Meyer, Nuala J, Wherry, E John, McGinniss, John E, Bushman, Frederic D, Collman, Ronald G

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Composition and dynamics of the respiratory tract microbiome in intubated patients von Kelly, Brendan J, Imai, Ize, Bittinger, Kyle, Laughlin, Alice, Fuchs, Barry D, Bushman, Frederic D, Collman, Ronald G

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Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania von Marques, Andrew D, Sherrill-Mix, Scott, Everett, John K, Adhikari, Hriju, Reddy, Shantan, Ellis, Julie C, Zeliff, Haley, Greening, Sabrina S, Cannuscio, Carolyn C, Strelau, Katherine M, Collman, Ronald G, Kelly, Brendan J, Rodino, Kyle G, Bushman, Frederic D, Gagne, Roderick B, Anis, Eman

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Tracking gut microbiome and bloodstream infection in critically ill adults von Gu, Christopher H, Khatib, Layla A, Fitzgerald, Ayannah S, Graham-Wooten, Jevon, Ittner, Caroline A, Sherrill-Mix, Scott, Chuang, YuChung, Glaser, Laurel J, Meyer, Nuala J, Bushman, Frederic D, Collman, Ronald G

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CD4 depletion in SIV-infected macaques results in macrophage and microglia infection with rapid turnover of infected cells von Micci, Luca, Alvarez, Xavier, Iriele, Robin I, Ortiz, Alexandra M, Ryan, Emily S, McGary, Colleen S, Deleage, Claire, McAtee, Brigitte B, He, Tianyu, Apetrei, Cristian, Easley, Kirk, Pahwa, Savita, Collman, Ronald G, Derdeyn, Cynthia A, Davenport, Miles P, Estes, Jacob D, Silvestri, Guido, Lackner, Andrew A, Paiardini, Mirko

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Multicenter Comparison of Lung and Oral Microbiomes of HIV-infected and HIV-uninfected Individuals von Beck, James M, Schloss, Patrick D, Venkataraman, Arvind, Twigg, 3rd, Homer, Jablonski, Kathleen A, Bushman, Frederic D, Campbell, Thomas B, Charlson, Emily S, Collman, Ronald G, Crothers, Kristina, Curtis, Jeffrey L, Drews, Kimberly L, Flores, Sonia C, Fontenot, Andrew P, Foulkes, Mary A, Frank, Ian, Ghedin, Elodie, Huang, Laurence, Lynch, Susan V, Morris, Alison, Palmer, Brent E, Schmidt, Thomas M, Sodergren, Erica, Weinstock, George M, Young, Vincent B

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Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples von Clarke, Erik L, Lauder, Abigail P, Hofstaedter, Casey E, Hwang, Young, Fitzgerald, Ayannah S, Imai, Ize, Biernat, Wojciech, Rękawiecki, Bartłomiej, Majewska, Hanna, Dubaniewicz, Anna, Litzky, Leslie A, Feldman, Michael D, Bittinger, Kyle, Rossman, Milton D, Patterson, Karen C, Bushman, Frederic D, Collman, Ronald G

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Statin modulation of monocyte phenotype and function: implications for HIV-1-associated neurocognitive disorders von Yadav, Anjana, Betts, Michael R., Collman, Ronald G.

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