Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children von Herberg, Jethro A, Kaforou, Myrsini, Wright, Victoria J, Shailes, Hannah, Eleftherohorinou, Hariklia, Hoggart, Clive J, Cebey-López, Miriam, Carter, Michael J, Janes, Victoria A, Gormley, Stuart, Shimizu, Chisato, Tremoulet, Adriana H, Barendregt, Anouk M, Salas, Antonio, Kanegaye, John, Pollard, Andrew J, Faust, Saul N, Patel, Sanjay, Kuijpers, Taco, Martinón-Torres, Federico, Burns, Jane C, Coin, Lachlan J. M, Levin, Michael

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MultiPhen: joint model of multiple phenotypes can increase discovery in GWAS von O'Reilly, Paul F, Hoggart, Clive J, Pomyen, Yotsawat, Calboli, Federico C F, Elliott, Paul, Jarvelin, Marjo-Riitta, Coin, Lachlan J M

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Real-time resolution of short-read assembly graph using ONT long reads von Nguyen, Son Hoang, Cao, Minh Duc, Coin, Lachlan J. M.

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Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content von Ganesamoorthy, Devika, Robertson, Alan James, Chen, Wenhan, Hall, Michael B, Cao, Minh Duc, Ferguson, Kaltin, Lakhani, Sunil R, Nones, Katia, Simpson, Peter T, Coin, Lachlan J M

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Genetic determinants of height growth assessed longitudinally from infancy to adulthood in the northern Finland birth cohort 1966 von Sovio, Ulla, Bennett, Amanda J, Millwood, Iona Y, Molitor, John, O'Reilly, Paul F, Timpson, Nicholas J, Kaakinen, Marika, Laitinen, Jaana, Haukka, Jari, Pillas, Demetris, Tzoulaki, Ioanna, Molitor, Jassy, Hoggart, Clive, Coin, Lachlan J M, Whittaker, John, Pouta, Anneli, Hartikainen, Anna-Liisa, Freimer, Nelson B, Widen, Elisabeth, Peltonen, Leena, Elliott, Paul, McCarthy, Mark I, Jarvelin, Marjo-Riitta

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Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly von Wang, Jun, Li, Yingrui, Zheng, Hancheng, Luo, Ruibang, Wu, Honglong, Zhu, Hongmei, Li, Ruiqiang, Cao, Hongzhi, Wu, Boxin, Huang, Shujia, Shao, Haojing, Ma, Hanzhou, Zhang, Fan, Feng, Shuijian, Zhang, Wei, Du, Hongli, Tian, Geng, Li, Jingxiang, Zhang, Xiuqing, Li, Songgang, Bolund, Lars, Kristiansen, Karsten, de Smith, Adam J, Blakemore, Alexandra I F, Coin, Lachlan J M, Yang, Huanming, Wang, Jian

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Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways von Eleftherohorinou, Hariklia, Hoggart, Clive J., Wright, Victoria J., Levin, Michael, Coin, Lachlan J.M.

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Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report von Bialasiewicz, Seweryn, Duarte, Tania P S, Nguyen, Son H, Sukumaran, Vichitra, Stewart, Alexandra, Appleton, Sally, Pitt, Miranda E, Bainomugisa, Arnold, Jennison, Amy V, Graham, Rikki, Coin, Lachlan J M, Hajkowicz, Krispin

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Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement von Wu, Shan, Lau, Kin H., Cao, Qinghe, Hamilton, John P., Sun, Honghe, Zhou, Chenxi, Eserman, Lauren, Gemenet, Dorcus C., Olukolu, Bode A., Wang, Haiyan, Crisovan, Emily, Godden, Grant T., Jiao, Chen, Wang, Xin, Kitavi, Mercy, Manrique-Carpintero, Norma, Vaillancourt, Brieanne, Wiegert-Rininger, Krystle, Yang, Xinsun, Bao, Kan, Schaff, Jennifer, Kreuze, Jan, Gruneberg, Wolfgang, Khan, Awais, Ghislain, Marc, Ma, Daifu, Jiang, Jiming, Mwanga, Robert O. M., Leebens-Mack, Jim, Coin, Lachlan J. M., Yencho, G. Craig, Buell, C. Robin, Fei, Zhangjun

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Dysregulation of complement system and CD4+ T cell activation pathways implicated in allergic response von Couto Alves, Alexessander, Bruhn, Sören, Ramasamy, Adaikalavan, Wang, Hui, Holloway, John W, Hartikainen, Anna-Liisa, Jarvelin, Marjo-Riitta, Benson, Mikael, Balding, David J, Coin, Lachlan J M

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Detection of Streptococcus pyogenes M1UK in Australia and characterization of the mutation driving enhanced expression of superantigen SpeA von Davies, Mark R., Keller, Nadia, Brouwer, Stephan, Jespersen, Magnus G., Cork, Amanda J., Hayes, Andrew J., Pitt, Miranda E., De Oliveira, David M. P., Harbison-Price, Nichaela, Bertolla, Olivia M., Mediati, Daniel G., Curren, Bodie F., Taiaroa, George, Lacey, Jake A., Smith, Helen V., Fang, Ning-Xia, Coin, Lachlan J. M., Stevens, Kerrie, Tong, Steven Y. C., Sanderson-Smith, Martina, Tree, Jai J., Irwin, Adam D., Grimwood, Keith, Howden, Benjamin P., Jennison, Amy V., Walker, Mark J.

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Scaffolding and completing genome assemblies in real-time with nanopore sequencing von Cao, Minh Duc, Nguyen, Son Hoang, Ganesamoorthy, Devika, Elliott, Alysha G., Cooper, Matthew A., Coin, Lachlan J. M.

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Positive-unlabeled learning in bioinformatics and computational biology: a brief review von Li, Fuyi, Dong, Shuangyu, Leier, André, Han, Meiya, Guo, Xudong, Xu, Jing, Wang, Xiaoyu, Pan, Shirui, Jia, Cangzhi, Zhang, Yang, Webb, Geoffrey I, Coin, Lachlan J M, Li, Chen, Song, Jiangning

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Diagnosis of Bacterial Infection Using a 2-Transcript Host RNA Signature in Febrile Infants 60 Days or Younger von Kaforou, Myrsini, Herberg, Jethro A, Wright, Victoria J, Coin, Lachlan J. M, Levin, Michael

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Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads von Turro, Ernest, Su, Shu-Yi, Gonçalves, Ângela, Coin, Lachlan J M, Richardson, Sylvia, Lewin, Alex

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Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea... von Gemenet, Dorcus C., da Silva Pereira, Guilherme, De Boeck, Bert, Wood, Joshua C., Mollinari, Marcelo, Olukolu, Bode A., Diaz, Federico, Mosquera, Veronica, Ssali, Reuben T., David, Maria, Kitavi, Mercy N., Burgos, Gabriela, Felde, Thomas Zum, Ghislain, Marc, Carey, Edward, Swanckaert, Jolien, Coin, Lachlan J. M., Fei, Zhangjun, Hamilton, John P., Yada, Benard, Yencho, G. Craig, Zeng, Zhao-Bang, Mwanga, Robert O. M., Khan, Awais, Gruneberg, Wolfgang J., Buell, C. Robin

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npInv: accurate detection and genotyping of inversions using long read sub-alignment von Shao, Haojing, Ganesamoorthy, Devika, Duarte, Tania, Cao, Minh Duc, Hoggart, Clive J, Coin, Lachlan J M

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Small deletion variants have stable breakpoints commonly associated with alu elements von de Smith, Adam J, Walters, Robin G, Coin, Lachlan J M, Steinfeld, Israel, Yakhini, Zohar, Sladek, Rob, Froguel, Philippe, Blakemore, Alexandra I F

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Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing von Raftery, Lyndon J, Howard, Christopher B, Grewal, Yadveer S, Vaidyanathan, Ramanathan, Jones, Martina L, Anderson, Will, Korbie, Darren, Duarte, Tania, Cao, Minh Duc, Nguyen, Son Hoang, Coin, Lachlan J. M, Mahler, Stephen M, Trau, Matt

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Comparison of long-read methods for sequencing and assembly of a plant genome von Murigneux, Valentine, Rai, Subash Kumar, Furtado, Agnelo, Bruxner, Timothy J C, Tian, Wei, Harliwong, Ivon, Wei, Hanmin, Yang, Bicheng, Ye, Qianyu, Anderson, Ellis, Mao, Qing, Drmanac, Radoje, Wang, Ou, Peters, Brock A, Xu, Mengyang, Wu, Pei, Topp, Bruce, Coin, Lachlan J M, Henry, Robert J

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