Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing von Lee, Emma R., Parkin, Neil, Jennings, Cheryl, Brumme, Chanson J., Enns, Eric, Casadellà, Maria, Howison, Mark, Coetzer, Mia, Avila-Rios, Santiago, Capina, Rupert, Marinier, Eric, Van Domselaar, Gary, Noguera-Julian, Marc, Kirkby, Don, Knaggs, Jeff, Harrigan, Richard, Quiñones-Mateu, Miguel, Paredes, Roger, Kantor, Rami, Sandstrom, Paul, Ji, Hezhao

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A Reliable Phenotype Predictor for Human Immunodeficiency Virus Type 1 Subtype C Based on Envelope V3 Sequences von Jensen, Mark A, Coetzer, Mia, van 't Wout, Angélique B, Morris, Lynn, Mullins, James I

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Resistance to the CCR5 inhibitor 5P12-RANTES requires a difficult evolution from CCR5 to CXCR4 coreceptor use von Nedellec, Rebecca, Coetzer, Mia, Lederman, Michael M, Offord, Robin E, Hartley, Oliver, Mosier, Donald E

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Treatment failure and drug resistance in HIV‐positive patients on tenofovir‐based first‐line antiretroviral therapy in western Kenya von Brooks, Katherine, Diero, Lameck, DeLong, Allison, Balamane, Maya, Reitsma, Marissa, Kemboi, Emmanuel, Orido, Millicent, Emonyi, Wilfred, Coetzer, Mia, Hogan, Joseph, Kantor, Rami

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Measurement error and variant-calling in deep Illumina sequencing of HIV von Howison, Mark, Coetzer, Mia, Kantor, Rami

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The CCR5 and CXCR4 Coreceptors Are Both Used by Human Immunodeficiency Virus Type 1 Primary Isolates from Subtype C von Cilliers, Tonie, Nhlapo, Jabulani, Coetzer, Mia, Orlovic, Dragana, Ketas, Thomas, Olson, William C, Moore, John P, Trkola, Alexandra, Morris, Lynn

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CCR5 Mutations Distinguish N-Terminal Modifications of RANTES (CCL5) with Agonist versus Antagonist Activity von CHOI, Won-Tak, NEDELLEC, Rebecca, COETZER, Mia, COLIN, Philippe, LAGANE, Bernard, OFFORD, Robin E, HARTLEY, Oliver, MOSIER, Donald E

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Evolution of CCR5 Use before and during Coreceptor Switching von COETZER, Mia, NEDELLEC, Rebecca, SALKOWITZ, Janelle, MCLAUGHLIN, Sherry, YI LIU, HEATH, Laura, MULLINS, James I, MOSIER, Donald E

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“Resistance” to PSC-RANTES Revisited: Two Mutations in Human Immunodeficiency Virus Type 1 HIV-1SF162 or Simian-Human Immunodeficiency Virus SHIVSF162-p3 Do Not Confer Resistance... von Nedellec, Rebecca, Coetzer, Mia, Lederman, Michael M., Offord, Robin E., Hartley, Oliver, Mosier, Donald E.

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Fitness epistasis and constraints on adaptation in a human immunodeficiency virus type 1 protein region von da Silva, Jack, Coetzer, Mia, Nedellec, Rebecca, Pastore, Cristina, Mosier, Donald E

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HIV-1 second-line failure and drug resistance at high-level and low-level viremia in Western Kenya von Kantor, Rami, DeLong, Allison, Schreier, Leeann, Reitsma, Marissa, Kemboi, Emanuel, Orido, Millicent, Obonge, Salome, Boinett, Robert, Rono, Mary, Emonyi, Wilfred, Brooks, Katie, Coetzer, Mia, Buziba, Nathan, Hogan, Joseph, Diero, Lameck

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Gp41 and Gag amino acids linked to HIV‐1 protease inhibitor‐based second‐line failure in HIV‐1 subtype A from Western Kenya von Coetzer, Mia, Ledingham, Lauren, Diero, Lameck, Kemboi, Emmanuel, Orido, Millicent, Kantor, Rami

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One-Step Ligation on RNA Amplification for the Detection of Point Mutations von Zhang, Lei, Wang, Jingjing, Coetzer, Mia, Angione, Stephanie, Kantor, Rami, Tripathi, Anubhav

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Improved HIV-1 Viral Load Monitoring Capacity Using Pooled Testing With Marker-Assisted Deconvolution von Liu, Tao, Hogan, Joseph W, Daniels, Michael J, Coetzer, Mia, Xu, Yizhen, Bove, Gerald, DeLong, Allison K, Ledingham, Lauren, Orido, Millicent, Diero, Lameck, Kantor, Rami

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Extreme Genetic Divergence Is Required for Coreceptor Switching in HIV-1 Subtype C von Coetzer, Mia, Nedellec, Rebecca, Cilliers, Tonie, Meyers, Tammy, Morris, Lynn, Mosier, Donald E

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HIV Second-Line Failure and Drug Resistance at High- and Low-Level Viremia in Western Kenya von KANTOR, Rami, DELONG, Allison, SCHREIER, Leeann, REITSMA, Marissa, KEMBOI, Emanuel, ORIDO, Millicent, OBONGE, Salome, BOINETT, Robert, RONO, Mary, EMONYI, Wilfred, BROOKS, Katie, COETZER, Mia, BUZIBA, Nathan, Hogan, Joseph, DIERO, Lameck

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2237. Validity of Self-Reported HCV Status Among Justice-Involved Persons Living with HIV von Noska, Amanda, Liu, Tao, Kuo, Irene, Coetzer, Mia, Kurth, Ann, Kantor, Rami, Beckwith, Curt

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Extensive drug resistance in HIV-infected Cambodian children who are undetected as failing first-line antiretroviral therapy by WHO 2010 guidelines von Coetzer, Mia, Westley, Benjamin, Delong, Allison, Tray, Chhraing, Sophearin, Dim, Nerrienet, Eric, Schreier, Leeann, Kantor, Rami

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Genetic characteristics of the V3 region associated with CXCR4 usage in HIV-1 subtype C isolates von Coetzer, Mia, Cilliers, Tonie, Ping, Li-Hua, Swanstrom, Ronald, Morris, Lynn

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2504. Laboratory Evaluation of HIV-1 Viral Load Pooling with Marker-Assisted Deconvolution von Holland, Sabina, DeLong, Allison, Liu, Tao, Makaretz, Anna, Coetzer, Mia, Ledingham, Lauren, Xu, Yizhen, Sam, Soya, Sagoe, Kwamena, Caliendo, Angela, Daniels, Michael, Hogan, Joseph, Kantor, Rami

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