GPA: a statistical approach to prioritizing GWAS results by integrating pleiotropy and annotation von Chung, Dongjun, Yang, Can, Li, Cong, Gelernter, Joel, Zhao, Hongyu

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LRT: Integrative analysis of scRNA-seq and scTCR-seq data to investigate clonal differentiation heterogeneity von Xie, Juan, Jeon, Hyeongseon, Xin, Gang, Ma, Qin, Chung, Dongjun

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Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding von Myers, Kevin S, Yan, Huihuang, Ong, Irene M, Chung, Dongjun, Liang, Kun, Tran, Frances, Keleş, Sündüz, Landick, Robert, Kiley, Patricia J

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Sparse Partial Least Squares Classification for High Dimensional Data von Chung, Dongjun, Keles, Sunduz

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multi-GPA-Tree: Statistical approach for pleiotropy informed and functional annotation tree guided prioritization of GWAS results von Khatiwada, Aastha, Yilmaz, Ayse Selen, Wolf, Bethany J, Pietrzak, Maciej, Chung, Dongjun

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Investigating the effects of chronic low-dose radiation exposure in the liver of a hypothermic zebrafish model von Cahill, Thomas, da Silveira, Willian Abraham, Renaud, Ludivine, Wang, Hao, Williamson, Tucker, Chung, Dongjun, Chan, Sherine, Overton, Ian, Hardiman, Gary

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Multiplexed assay of variant effect reveals residues of functional importance in the BRCA1 coiled-coil and serine cluster domains von Nagy, Gregory, Diabate, Mariame, Banerjee, Tapahsama, Adamovich, Aleksandra I, Smith, Nahum, Jeon, Hyeongseon, Dhar, Shruti, Liu, Wenfang, Burgess, Katherine, Chung, Dongjun, Starita, Lea M, Parvin, Jeffrey D

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PALMER: improving pathway annotation based on the biomedical literature mining with a constrained latent block model von Nam, Jin Hyun, Couch, Daniel, da Silveira, Willian A, Yu, Zhenning, Chung, Dongjun

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graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture von Chung, Dongjun, Kim, Hang J, Zhao, Hongyu

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A Statistical Framework for the Analysis of ChIP-Seq Data von Kuan, Pei Fen, Chung, Dongjun, Pan, Guangjin, Thomson, James A., Stewart, Ron, Keleş, Sündüz

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Statistical Power Analysis for Designing Bulk, Single-Cell, and Spatial Transcriptomics Experiments: Review, Tutorial, and Perspectives von Jeon, Hyeongseon, Xie, Juan, Jeon, Yeseul, Jung, Kyeong Joo, Gupta, Arkobrato, Chang, Won, Chung, Dongjun

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graph-GPA 2.0: improving multi-disease genetic analysis with integration of functional annotation data von Deng, Qiaolan, Gupta, Arkobrato, Jeon, Hyeongseon, Nam, Jin Hyun, Yilmaz, Ayse Selen, Chang, Won, Pietrzak, Maciej, Li, Lang, Kim, Hang J, Chung, Dongjun

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Treatment with soluble CD24 attenuates COVID-19-associated systemic immunopathology von Song, No-Joon, Allen, Carter, Vilgelm, Anna E, Riesenberg, Brian P, Weller, Kevin P, Reynolds, Kelsi, Chakravarthy, Karthik B, Kumar, Amrendra, Khatiwada, Aastha, Sun, Zequn, Ma, Anjun, Chang, Yuzhou, Yusuf, Mohamed, Li, Anqi, Zeng, Cong, Evans, John P, Bucci, Donna, Gunasena, Manuja, Xu, Menglin, Liyanage, Namal P M, Bolyard, Chelsea, Velegraki, Maria, Liu, Shan-Lu, Ma, Qin, Devenport, Martin, Liu, Yang, Zheng, Pan, Malvestutto, Carlos D, Chung, Dongjun, Li, Zihai

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Impact of Anaerobiosis on Expression of the Iron-Responsive Fur and RyhB Regulons von Beauchene, Nicole A, Myers, Kevin S, Chung, Dongjun, Park, Dan M, Weisnicht, Allison M, Keleş, Sündüz, Kiley, Patricia J

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GAIL: An interactive webserver for inference and dynamic visualization of gene-gene associations based on gene ontology guided mining of biomedical literature von Couch, Daniel, Yu, Zhenning, Nam, Jin Hyun, Allen, Carter, Ramos, Paula S, da Silveira, Willian A, Hunt, Kelly J, Hazard, Edward S, Hardiman, Gary, Lawson, Andrew, Chung, Dongjun

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Analysis of community connectivity in spatial transcriptomics data von Xie, Juan, Jung, Kyeong Joo, Allen, Carter, Chang, Yuzhou, Paul, Subhadeep, Li, Zihai, Ma, Qin, Chung, Dongjun

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Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning von Chang, Yuzhou, He, Fei, Wang, Juexin, Chen, Shuo, Li, Jingyi, Liu, Jixin, Yu, Yang, Su, Li, Ma, Anjun, Allen, Carter, Lin, Yu, Sun, Shaoli, Liu, Bingqiang, Javier Otero, José, Chung, Dongjun, Fu, Hongjun, Li, Zihai, Xu, Dong, Ma, Qin

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Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data von Chung, Dongjun, Kuan, Pei Fen, Li, Bo, Sanalkumar, Rajendran, Liang, Kun, Bresnick, Emery H, Dewey, Colin, Keleş, Sündüz

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Differential immune signatures in the tumor microenvironment are associated with colon cancer racial disparities von Curran, Thomas, Sun, Zequn, Gerry, Brielle, Findlay, Victoria J., Wallace, Kristin, Li, Zihai, Paulos, Chrystal, Ford, Marvella, Rubinstein, Mark P., Chung, Dongjun, Camp, E. Ramsay

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Sex-biased adaptive immune regulation in cancer development and therapy von Schafer, Johanna M., Xiao, Tong, Kwon, Hyunwoo, Collier, Katharine, Chang, Yuzhou, Abdel-Hafiz, Hany, Bolyard, Chelsea, Chung, Dongjun, Yang, Yuanquan, Sundi, Debasish, Ma, Qin, Theodorescu, Dan, Li, Xue, Li, Zihai

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