Microbial Nitrogen Cycling in Estuaries: From Genes to Ecosystem Processes von Damashek, Julian, Francis, Christopher A.

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Ammonium uptake by phytoplankton regulates nitrification in the sunlit ocean von Smith, Jason M, Chavez, Francisco P, Francis, Christopher A

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Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis von Blainey, Paul C, Mosier, Annika C, Potanina, Anastasia, Francis, Christopher A, Quake, Stephen R

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Metagenome-assembled genomes reveal unique metabolic adaptations of a basal marine Thaumarchaeota lineage von Reji, Linta, Francis, Christopher A.

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Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary von Mosier, Annika C, Francis, Christopher A

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Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current von Santoro, Alyson E, Casciotti, Karen L, Francis, Christopher A

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Diversity of Ammonia-Oxidizing Archaea and Bacteria in the Sediments of a Hypernutrified Subtropical Estuary: Bahía del Tóbari, Mexico von BEMAN, J. Michael, FRANCIS, Christopher A

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Dynamics and activity of an ammonia-oxidizing archaea bloom in South San Francisco Bay von Rasmussen, Anna, Francis, Christopher A

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Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California von Beman, J Michael, Popp, Brian N, Francis, Christopher A

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Inhaled diesel exhaust alters the allergen-induced bronchial secretome in humans von Mookherjee, Neeloffer, Piyadasa, Hadeesha, Ryu, Min Hyung, Rider, Christopher Francis, Ezzati, Peyman, Spicer, Victor, Carlsten, Christopher

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Convergence and contrast in the community structure of Bacteria, Fungi and Archaea along a tropical elevation–climate gradient von Peay, Kabir G., von Sperber, Christian, Cardarelli, Emily, Toju, Hirokazu, Francis, Christopher A., Chadwick, Oliver A., Vitousek, Peter M.

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Combined niche and neutral effects in a microbial wastewater treatment community von Ofiţeru, Irina Dana, Lunn, Mary, Curtis, Thomas P., Wells, George F., Criddle, Craig S., Francis, Christopher A., Sloan, William T., Tiedje, James M.

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Variable Nitrification Rates Across Environmental Gradients in Turbid, Nutrient-Rich Estuary Waters of San Francisco Bay von Damashek, Julian, Casciotti, Karen L., Francis, Christopher A.

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Changes in Bacterial and Archaeal Community Structure and Functional Diversity along a Geochemically Variable Soil Profile von Hansel, Colleen M, Fendorf, Scott, Jardine, Phillip M, Francis, Christopher A

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Ubiquity and Diversity of Ammonia-Oxidizing Archaea in Water Columns and Sediments of the Ocean von Francis, Christopher A, Roberts, Kathryn J, Beman, J Michael, Santoro, Alyson E, Oakley, Brian B

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Spatiotemporal Characterization of San Francisco Bay Denitrifying Communities: a Comparison of nirK and nirS Diversity and Abundance von Lee, Jessica A., Francis, Christopher A.

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New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation von Francis, Christopher A, Beman, J Michael, Kuypers, Marcel M M

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Ecophysiology and genomics of the brackish water adapted SAR11 subclade IIIa von Lanclos, V. Celeste, Rasmussen, Anna N., Kojima, Conner Y., Cheng, Chuankai, Henson, Michael W., Faircloth, Brant C., Francis, Christopher A., Thrash, J. Cameron

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Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column von Reji, Linta, Tolar, Bradley B., Smith, Jason M., Chavez, Francisco P., Francis, Christopher A.

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Fine-scale bacterial community dynamics and the taxa–time relationship within a full-scale activated sludge bioreactor von Wells, George F., Park, Hee-Deung, Eggleston, Brad, Francis, Christopher A., Criddle, Craig S.

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