Cistrome Cancer: A Web Resource for Integrative Gene Regulation Modeling in Cancer von Mei, Shenglin, Meyer, Clifford A, Zheng, Rongbin, Qin, Qian, Wu, Qiu, Jiang, Peng, Li, Bo, Shi, Xiaohui, Wang, Binbin, Fan, Jingyu, Shih, Celina, Brown, Myles, Zang, Chongzhi, Liu, X Shirley

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Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse von Mei, Shenglin, Qin, Qian, Wu, Qiu, Sun, Hanfei, Zheng, Rongbin, Zang, Chongzhi, Zhu, Muyuan, Wu, Jiaxin, Shi, Xiaohui, Taing, Len, Liu, Tao, Brown, Myles, Meyer, Clifford A, Liu, X Shirley

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H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions von Zhao, Keji, Felsenfeld, Gary, Jin, Chunyuan, Zang, Chongzhi, Wei, Gang, Cui, Kairong, Peng, Weiqun

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Partitioning heritability by functional annotation using genome-wide association summary statistics von Finucane, Hilary K, Bulik-Sullivan, Brendan, Gusev, Alexander, Trynka, Gosia, Reshef, Yakir, Loh, Po-Ru, Anttila, Verneri, Xu, Han, Zang, Chongzhi, Farh, Kyle, Ripke, Stephan, Day, Felix R, Purcell, Shaun, Stahl, Eli, Lindstrom, Sara, Perry, John R B, Okada, Yukinori, Raychaudhuri, Soumya, Daly, Mark J, Patterson, Nick, Neale, Benjamin M, Price, Alkes L

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A clustering approach for identification of enriched domains from histone modification ChIP-Seq data von Zang, Chongzhi, Schones, Dustin E., Zeng, Chen, Cui, Kairong, Zhao, Keji, Peng, Weiqun

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U2af1 is required for survival and function of hematopoietic stem/progenitor cells von Dutta, Avik, Yang, Yue, Le, Bao T., Zhang, Yifan, Abdel-Wahab, Omar, Zang, Chongzhi, Mohi, Golam

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The Role of Notch Receptors in Transcriptional Regulation von Wang, Hongfang, Zang, Chongzhi, Liu, X. Shirley, Aster, Jon C.

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Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes von Wang, Zhibin, Zang, Chongzhi, Cui, Kairong, Schones, Dustin E., Barski, Artem, Peng, Weiqun, Zhao, Keji

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Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III von Dinda, Manikarna, Fine, Ryan D, Saha, Shekhar, Wang, Zhenjia, Zang, Chongzhi, Li, Mingguang, Smith, Jeffrey S

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Tcf1 preprograms the mobilization of glycolysis in central memory CD8+ T cells during recall responses von Shan, Qiang, Hu, Shengen Shawn, Zhu, Shaoqi, Chen, Xia, Badovinac, Vladimir P., Peng, Weiqun, Zang, Chongzhi, Xue, Hai-Hui

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Ectopic Tcf1 expression instills a stem-like program in exhausted CD8+ T cells to enhance viral and tumor immunity von Shan, Qiang, Hu, Sheng’en, Chen, Xia, Danahy, Derek B., Badovinac, Vladimir P., Zang, Chongzhi, Xue, Hai-Hui

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Combinatorial patterns of histone acetylations and methylations in the human genome von Zhao, Keji, Wang, Zhibin, Zang, Chongzhi, Rosenfeld, Jeffrey A, Schones, Dustin E, Barski, Artem, Cuddapah, Suresh, Cui, Kairong, Roh, Tae-Young, Peng, Weiqun, Zhang, Michael Q

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NOTCH1–RBPJ complexes drive target gene expression through dynamic interactions with superenhancers von Wang, Hongfang, Zang, Chongzhi, Taing, Len, Arnett, Kelly L., Wong, Yinling Joey, Pear, Warren S., Blacklow, Stephen C., Liu, Shirley, Aster, Jon C.

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Integrative analysis of DNA replication origins and ORC-/MCM-binding sites in human cells reveals a lack of overlap von Tian, Mengxue, Wang, Zhenjia, Su, Zhangli, Shibata, Etsuko, Shibata, Yoshiyuki, Dutta, Anindya, Zang, Chongzhi

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Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation von Fang, Celestia, Wang, Zhenjia, Han, Cuijuan, Safgren, Stephanie L, Helmin, Kathryn A, Adelman, Emmalee R, Serafin, Valentina, Basso, Giuseppe, Eagen, Kyle P, Gaspar-Maia, Alexandre, Figueroa, Maria E, Singer, Benjamin D, Ratan, Aakrosh, Ntziachristos, Panagiotis, Zang, Chongzhi

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Extracting physical characteristics of higher-order chromatin structures from 3D image data von Lamberti, William Franz, Zang, Chongzhi

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A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation von Geng, Yuncong, Bohrer, Christopher Herrick, Yehya, Nicolás, Hendrix, Hunter, Shachaf, Lior, Liu, Jian, Xiao, Jie, Roberts, Elijah

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Chromatin Signatures in Multipotent Human Hematopoietic Stem Cells Indicate the Fate of Bivalent Genes during Differentiation von KAIRONG CUI, CHONGZHI ZANG, ROH, Tae-Young, SCHONES, Dustin E, CHILDS, Richard W, WEIQUN PENG, KEJI ZHAO

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Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification von He, Housheng Hansen, Meyer, Clifford A, Hu, Sheng'en Shawn, Chen, Mei-Wei, Zang, Chongzhi, Liu, Yin, Rao, Prakash K, Fei, Teng, Xu, Han, Long, Henry, Liu, X Shirley, Brown, Myles

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Transcriptome diversity is a systematic source of variation in RNA-sequencing data von García-Nieto, Pablo E, Wang, Ban, Fraser, Hunter B

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