Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution von Cheng, Jeffrey B., Sedgewick, Andrew J., Finnegan, Alex I., Harirchian, Paymann, Lee, Jerry, Kwon, Sunjong, Fassett, Marlys S., Golovato, Justin, Gray, Matthew, Ghadially, Ruby, Liao, Wilson, Perez White, Bethany E., Mauro, Theodora M., Mully, Thaddeus, Kim, Esther A., Sbitany, Hani, Neuhaus, Isaac M., Grekin, Roy C., Yu, Siegrid S., Gray, Joe W., Purdom, Elizabeth, Paus, Ralf, Vaske, Charles J., Benz, Stephen C., Song, Jun S., Cho, Raymond J.

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Cell of origin and mutation pattern define three clinically distinct classes of sebaceous carcinoma von North, Jeffrey P., Golovato, Justin, Vaske, Charles J., Sanborn, J. Zachary, Nguyen, Andrew, Wu, Wei, Goode, Benjamin, Stevers, Meredith, McMullen, Kevin, Perez White, Bethany E., Collisson, Eric A., Bloomer, Michele, Solomon, David A., Benz, Stephen C., Cho, Raymond J.

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Phylogenetic analyses of melanoma reveal complex patterns of metastatic dissemination von Sanborn, J. Zachary, Chung, Jongsuk, Purdom, Elizabeth, Wang, Nicholas J., Kakavand, Hojabr, Wilmott, James S., Butler, Timothy, Thompson, John F., Mann, Graham J., Haydu, Lauren E., Saw, Robyn P. M., Busam, Klaus J., Lo, Roger S., Collisson, Eric A., Hur, Joe S., Spellman, Paul T., Cleaver, James E., Gray, Joe W., Huh, Nam, Murali, Rajmohan, Scolyer, Richard A., Bastian, Boris C., Cho, Raymond J.

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GLUT3 promotes macrophage signaling and function via RAS-mediated endocytosis in atopic dermatitis and wound healing von Yu, Dong-Min, Zhao, Jiawei, Lee, Eunice E, Kim, Dohun, Mahapatra, Ruchika, Rose, Elysha K, Zhou, Zhiwei, Hosler, Calvin, El Kurdi, Abdullah, Choe, Jun-Yong, Abel, E Dale, Hoxhaj, Gerta, Westover, Kenneth D, Cho, Raymond J, Cheng, Jeffrey B, Wang, Richard C

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STmut: a framework for visualizing somatic alterations in spatial transcriptomics data of cancer von Chen, Limin, Chang, Darwin, Tandukar, Bishal, Deivendran, Delahny, Pozniak, Joanna, Cruz-Pacheco, Noel, Cho, Raymond J, Cheng, Jeffrey, Yeh, Iwei, Marine, Chris, Bastian, Boris C, Ji, Andrew L, Shain, A Hunter

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A network-based analysis of systemic inflammation in humans von Davis, Ronald W, Calvano, Steve E, Xiao, Wenzhong, Richards, Daniel R, Felciano, Ramon M, Baker, Henry V, Cho, Raymond J, Chen, Richard O, Brownstein, Bernard H, Cobb, J. Perren, Tschoeke, S. Kevin, Miller-Graziano, Carol, Moldawer, Lyle L, Mindrinos, Michael N, Tompkins, Ronald G, Lowry, Stephen F, Large Scale Collab. Res. Program, Inflamm and Host Response to Injury

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Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators von Finnegan, Alex, Cho, Raymond J., Luu, Alan, Harirchian, Paymann, Lee, Jerry, Cheng, Jeffrey B., Song, Jun S.

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Multiregion exome sequencing of ovarian immature teratomas reveals 2N near-diploid genomes, paucity of somatic mutations, and extensive allelic imbalances shared across mature, imm... von Heskett, Michael B., Sanborn, John Z., Boniface, Christopher, Goode, Benjamin, Chapman, Jocelyn, Garg, Karuna, Rabban, Joseph T., Zaloudek, Charles, Benz, Stephen C., Spellman, Paul T., Solomon, David A., Cho, Raymond J.

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Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics von Liu, Yale, Wang, Hao, Cook, Christopher, Taylor, Mark A., North, Jeffrey P., Hailer, Ashley, Shou, Yanhong, Sadik, Arsil, Kim, Esther, Purdom, Elizabeth, Cheng, Jeffrey B., Cho, Raymond J.

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Temporal dissection of tumorigenesis in primary cancers von Durinck, Steffen, Ho, Christine, Wang, Nicholas J, Liao, Wilson, Jakkula, Lakshmi R, Collisson, Eric A, Pons, Jennifer, Chan, Sai-Wing, Lam, Ernest T, Chu, Catherine, Park, Kyunghee, Hong, Sung-woo, Hur, Joe S, Huh, Nam, Neuhaus, Isaac M, Yu, Siegrid S, Grekin, Roy C, Mauro, Theodora M, Cleaver, James E, Kwok, Pui-Yan, LeBoit, Philip E, Getz, Gad, Cibulskis, Kristian, Aster, Jon C, Huang, Haiyan, Purdom, Elizabeth, Li, Jian, Bolund, Lars, Arron, Sarah T, Gray, Joe W, Spellman, Paul T, Cho, Raymond J

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Systematic determination of genetic network architecture von Church, George M, Tavazoie, Saeed, Hughes, Jason D, Campbell, Michael J, Cho, Raymond J

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Short cell cycle duration is a phenotype of human epidermal stem cells von Xiao, Tong, Eze, Ugomma C, Charruyer-Reinwald, Alex, Weisenberger, Tracy, Khalifa, Ayman, Abegaze, Brook, Schwab, Gabrielle K, Elsabagh, Rasha H, Parenteau, T Richard, Kochanowski, Karl, Piper, Merisa, Xia, Yumin, Cheng, Jeffrey B, Cho, Raymond J, Ghadially, Ruby

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Isolation of human cutaneous immune cells for single-cell RNA sequencing von Hailer, Ashley A., Wu, David, El Kurdi, Abdullah, Yuan, Michelle, Cho, Raymond J., Cheng, Jeffrey B.

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Transcriptional regulation and function during the human cell cycle von Campbell, Michael J, Cho, Raymond J, Huang, Mingxia, Dong, Helin, Steinmetz, Lars, Sapinoso, Lisa, Hampton, Garret, Elledge, Stephen J, Davis, Ronald W, Lockhart, David J

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Elevated APOBEC mutational signatures implicate chronic injury in etiology of an aggressive head-and-neck squamous cell carcinoma: a case report von Patel, Jena, Breems, Nicoline Y den, Tuluc, Madalina, Johnson, Jennifer, Curry, Joseph M, South, Andrew P, Cho, Raymond J

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Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway von Shain, A Hunter, Garrido, Maria, Botton, Thomas, Talevich, Eric, Yeh, Iwei, Sanborn, J Zachary, Chung, Jongsuk, Wang, Nicholas J, Kakavand, Hojabr, Mann, Graham J, Thompson, John F, Wiesner, Thomas, Roy, Ritu, Olshen, Adam B, Gagnon, Alexander, Gray, Joe W, Huh, Nam, Hur, Joe S, Busam, Klaus J, Scolyer, Richard A, Cho, Raymond J, Murali, Rajmohan, Bastian, Boris C

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The double-edged sword of Notch signaling in cancer von South, Andrew P., Cho, Raymond J., Aster, Jon C.

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Spectral clustering of single-cell multi-omics data on multilayer graphs von Zhang, Shuyi, Leistico, Jacob R, Cho, Raymond J, Cheng, Jeffrey B, Song, Jun S

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Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data von Zhang, Shuyi, Leistico, Jacob R., Cook, Christopher, Liu, Yale, Cho, Raymond J., Cheng, Jeffrey B., Song, Jun S.

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Optimizing Single T-Cell Transcriptomic Discrimination of Atopic Dermatitis Versus Psoriasis Vulgaris von Taylor, Mark A., El Kurdi, Abdullah, Hailer, Ashley, Wang, Sijia, Yuan, Michelle, Mukhopadhyay, Sumanta, Bhutani, Tina, North, Jeffrey P., Cho, Raymond J., Cheng, Jeffrey B.

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