The Encyclopedia of DNA elements (ENCODE): data portal update von Davis, Carrie A, Hitz, Benjamin C, Sloan, Cricket A, Chan, Esther T, Davidson, Jean M, Gabdank, Idan, Hilton, Jason A, Jain, Kriti, Baymuradov, Ulugbek K, Narayanan, Aditi K, Onate, Kathrina C, Graham, Keenan, Miyasato, Stuart R, Dreszer, Timothy R, Strattan, J Seth, Jolanki, Otto, Tanaka, Forrest Y, Cherry, J Michael

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H3K4me3 Breadth Is Linked to Cell Identity and Transcriptional Consistency von Benayoun, Bérénice A., Pollina, Elizabeth A., Ucar, Duygu, Mahmoudi, Salah, Karra, Kalpana, Wong, Edith D., Devarajan, Keerthana, Daugherty, Aaron C., Kundaje, Anshul B., Mancini, Elena, Hitz, Benjamin C., Gupta, Rakhi, Rando, Thomas A., Baker, Julie C., Snyder, Michael P., Cherry, J. Michael, Brunet, Anne

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Annotation of functional variation in personal genomes using RegulomeDB von Boyle, Alan P, Hong, Eurie L, Hariharan, Manoj, Cheng, Yong, Schaub, Marc A, Kasowski, Maya, Karczewski, Konrad J, Park, Julie, Hitz, Benjamin C, Weng, Shuai, Cherry, J Michael, Snyder, Michael

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New developments on the Encyclopedia of DNA Elements (ENCODE) data portal von Luo, Yunhai, Hitz, Benjamin C, Gabdank, Idan, Hilton, Jason A, Kagda, Meenakshi S, Lam, Bonita, Myers, Zachary, Sud, Paul, Jou, Jennifer, Lin, Khine, Baymuradov, Ulugbek K, Graham, Keenan, Litton, Casey, Miyasato, Stuart R, Strattan, J Seth, Jolanki, Otto, Lee, Jin-Wook, Tanaka, Forrest Y, Adenekan, Philip, O’Neill, Emma, Cherry, J Michael

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Evaluating the Clinical Validity of Gene-Disease Associations: An Evidence-Based Framework Developed by the Clinical Genome Resource von Strande, Natasha T., Riggs, Erin Rooney, Buchanan, Adam H., Ceyhan-Birsoy, Ozge, DiStefano, Marina, Dwight, Selina S., Goldstein, Jenny, Ghosh, Rajarshi, Seifert, Bryce A., Sneddon, Tam P., Wright, Matt W., Milko, Laura V., Cherry, J. Michael, Giovanni, Monica A., Murray, Michael F., O’Daniel, Julianne M., Ramos, Erin M., Santani, Avni B., Scott, Alan F., Plon, Sharon E., Rehm, Heidi L., Martin, Christa L., Berg, Jonathan S.

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A gene ontology inferred from molecular networks von Dutkowski, Janusz, Kramer, Michael, Surma, Michal A, Balakrishnan, Rama, Cherry, J Michael, Krogan, Nevan J, Ideker, Trey

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YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit von Balakrishnan, Rama, Park, Julie, Karra, Kalpana, Hitz, Benjamin C, Binkley, Gail, Hong, Eurie L, Sullivan, Julie, Micklem, Gos, Cherry, J Michael

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AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae von Song, Giltae, Dickins, Benjamin J A, Demeter, Janos, Engel, Stacia, Gallagher, Jennifer, Choe, Kisurb, Dunn, Barbara, Snyder, Michael, Cherry, J Michael

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Data Sanitization to Reduce Private Information Leakage from Functional Genomics von Gürsoy, Gamze, Emani, Prashant, Brannon, Charlotte M., Jolanki, Otto A., Harmanci, Arif, Strattan, J. Seth, Cherry, J. Michael, Miranker, Andrew D., Gerstein, Mark

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Sex-specific effects of reproductive season on bobcat space use, movement, and resource selection in the Appalachian Mountains of Virginia von McNitt, David C, Alonso, Robert S, Cherry, Michael J, Fies, Michael L, Kelly, Marcella J

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Winter roost selection of Lasiurine tree bats in a pyric landscape von Jorge, Marcelo H, Ford, W Mark, Sweeten, Sara E, Freeze, Samuel R, True, Michael C, St Germain, Michael J, Taylor, Hila, Gorman, Katherine M, Garrison, Elina P, Cherry, Michael J

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An applied ecology of fear framework: linking theory to conservation practice von Gaynor, Kaitlyn M., Cherry, Michael J., Gilbert, Sophie L., Kohl, Michel T., Larson, Courtney L., Newsome, Thomas M., Prugh, Laura R., Suraci, Justin P., Young, Julie K., Smith, Justine A.

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Multiscale assessment of habitat selection and avoidance of sympatric carnivores by the endangered ocelot von Sergeyev, Maksim, Cherry, Michael J., Tanner, Evan P., Lombardi, Jason V., Tewes, Michael E., Campbell, Tyler A.

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CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection von Oh, Dongpin, Strattan, J. Seth, Hur, Junho K., Bento, José, Urban, Alexander Eckehart, Song, Giltae, Cherry, J. Michael

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Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies von Song, Giltae, Lee, Jongin, Kim, Juyeon, Kang, Seokwoo, Lee, Hoyong, Kwon, Daehong, Lee, Daehwan, Lang, Gregory I, Cherry, J Michael, Kim, Jaebum

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Activity patterns and temporal predator avoidance of white-tailed deer (Odocoileus virginianus) during the fawning season von Higdon, Summer D., Diggins, Corinne A., Cherry, Michael J., Ford, W. Mark

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A guide to best practices for Gene Ontology (GO) manual annotation von Balakrishnan, Rama, Harris, Midori A, Huntley, Rachael, Van Auken, Kimberly, Cherry, J Michael

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Habitat selection and diurnal refugia of gray foxes in southwestern Georgia, USA von Deuel, Nicholas R, Conner, L Mike, Miller, Karl V, Chamberlain, Michael J, Cherry, Michael J, Tannenbaum, Larry V

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ClinGen Variant Curation Interface: a variant classification platform for the application of evidence criteria from ACMG/AMP guidelines von Preston, Christine G, Wright, Matt W, Madhavrao, Rao, Harrison, Steven M, Goldstein, Jennifer L, Luo, Xi, Wand, Hannah, Wulf, Bryan, Cheung, Gloria, Mandell, Mark E, Tong, Howard, Cheng, Shaung, Iacocca, Michael A, Pineda, Arturo Lopez, Popejoy, Alice B, Dalton, Karen, Zhen, Jimmy, Dwight, Selina S, Babb, Lawrence, DiStefano, Marina, O'Daniel, Julianne M, Lee, Kristy, Riggs, Erin R, Zastrow, Diane B, Mester, Jessica L, Ritter, Deborah I, Patel, Ronak Y, Subramanian, Sai Lakshmi, Milosavljevic, Aleksander, Berg, Jonathan S, Rehm, Heidi L, Plon, Sharon E, Cherry, J Michael, Bustamante, Carlos D, Costa, Helio A

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Saccharomyces genome database informs human biology von Skrzypek, Marek S, Nash, Robert S, Wong, Edith D, MacPherson, Kevin A, Hellerstedt, Sage T, Engel, Stacia R, Karra, Kalpana, Weng, Shuai, Sheppard, Travis K, Binkley, Gail, Simison, Matt, Miyasato, Stuart R, Cherry, J Michael

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