CamoTSS: analysis of alternative transcription start sites for cellular phenotypes and regulatory patterns from 5' scRNA-seq data von Hou, Ruiyan, Hon, Chung-Chau, Huang, Yuanhua

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Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis von Liu, Ye, Chang, Jen-Chien, Hon, Chung-Chau, Fukui, Naoshi, Tanaka, Nobuho, Zhang, Zhenya, Lee, Ming Ta Michael, Minoda, Aki

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C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution von Kouno, Tsukasa, Moody, Jonathan, Kwon, Andrew Tae-Jun, Shibayama, Youtaro, Kato, Sachi, Huang, Yi, Böttcher, Michael, Motakis, Efthymios, Mendez, Mickaël, Severin, Jessica, Luginbühl, Joachim, Abugessaisa, Imad, Hasegawa, Akira, Takizawa, Satoshi, Arakawa, Takahiro, Furuno, Masaaki, Ramalingam, Naveen, West, Jay, Suzuki, Harukazu, Kasukawa, Takeya, Lassmann, Timo, Hon, Chung-Chau, Arner, Erik, Carninci, Piero, Plessy, Charles, Shin, Jay W.

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Systematic functional interrogation of human pseudogenes using CRISPRi von Sun, Ming, Wang, Yunfei, Zheng, Caishang, Wei, Yanjun, Hou, Jiakai, Zhang, Peng, He, Wei, Lv, Xiangdong, Ding, Yao, Liang, Han, Hon, Chung-Chau, Chen, Xi, Xu, Han, Chen, Yiwen

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Defining super-enhancers by highly ranked histone H4 multi-acetylation levels identifies transcription factors associated with glioblastoma stem-like properties von Das, Nando D, Chang, Jen-Chien, Hon, Chung-Chau, Kelly, S. Thomas, Ito, Shinsuke, Lizio, Marina, Kaczkowski, Bogumil, Watanabe, Hisami, Katsushima, Keisuke, Natsume, Atsushi, Koseki, Haruhiko, Kondo, Yutaka, Minoda, Aki, Umehara, Takashi

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Isotactic polypropylene metal oxide and silica nanocomposites by a two‐step process comprising in situ olefin polymerization and melt compounding von Käselau, Sven, Scheel, Saskia, Petersson, Linnea, Ho, Chau‐Hon, Luinstra, Gerrit A

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FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs von Abugessaisa, Imad, Ramilowski, Jordan A, Lizio, Marina, Severin, Jesicca, Hasegawa, Akira, Harshbarger, Jayson, Kondo, Atsushi, Noguchi, Shuhei, Yip, Chi Wai, Ooi, Jasmine Li Ching, Tagami, Michihira, Hori, Fumi, Agrawal, Saumya, Hon, Chung Chau, Cardon, Melissa, Ikeda, Shuya, Ono, Hiromasa, Bono, Hidemasa, Kato, Masaki, Hashimoto, Kosuke, Bonetti, Alessandro, Kato, Masaki, Kobayashi, Norio, Shin, Jay, de Hoon, Michiel, Hayashizaki, Yoshihide, Carninci, Piero, Kawaji, Hideya, Kasukawa, Takeya

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Synthesis of a linear low‐density polyethylene/MgO@Mg(OH)2 nanocomposite using modified in situ polymerization von Käselau, Sven, Scheel, Saskia, Petersson, Linnea, Ho, Chau‐Hon, Luinstra, Gerrit A

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Phylogeny-Based Evolutionary, Demographical, and Geographical Dissection of North American Type 2 Porcine Reproductive and Respiratory Syndrome Viruses von Shi, Mang, Lam, Tommy Tsan-Yuk, Hon, Chung-Chau, Murtaugh, Michael P, Davies, Peter R, Hui, Raymond Kin-Hei, Li, Jun, Wong, Lina Tik-Wim, Yip, Chi-Wai, Jiang, Jin-Wai, Leung, Frederick Chi-Ching

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Analysis of splice variants of the human protein disulfide isomerase (P4HB) gene von Kajihara, Daniela, Hon, Chung-Chau, Abdullah, Aimi Naim, Wosniak, Jr, João, Moretti, Ana Iochabel S, Poloni, Joice F, Bonatto, Diego, Hashimoto, Kosuke, Carninci, Piero, Laurindo, Francisco R M

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Annotation of nuclear lncRNAs based on chromatin interactions von Agrawal, Saumya, Buyan, Andrey, Severin, Jessica, Koido, Masaru, Alam, Tanvir, Abugessaisa, Imad, Chang, Howard Y, Dostie, Josée, Itoh, Masayoshi, Kere, Juha, Kondo, Naoto, Li, Yunjing, Makeev, Vsevolod J, Mendez, Mickaël, Okazaki, Yasushi, Ramilowski, Jordan A, Sigorskikh, Andrey I, Strug, Lisa J, Yagi, Ken, Yasuzawa, Kayoko, Yip, Chi Wai, Hon, Chung Chau, Hoffman, Michael M, Terao, Chikashi, Kulakovskiy, Ivan V, Kasukawa, Takeya, Shin, Jay W, Carninci, Piero, de Hoon, Michiel J L

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Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon von Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy

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Update of the FANTOM web resource: expansion to provide additional transcriptome atlases von Lizio, Marina, Abugessaisa, Imad, Noguchi, Shuhei, Kondo, Atsushi, Hasegawa, Akira, Hon, Chung Chau, de Hoon, Michiel, Severin, Jessica, Oki, Shinya, Hayashizaki, Yoshihide, Carninci, Piero, Kasukawa, Takeya, Kawaji, Hideya

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Recounting the FANTOM CAGE-Associated Transcriptome von Imada, Eddie Luidy, Sanchez, Diego Fernando, Collado-Torres, Leonardo, Wilks, Christopher, Matam, Tejasvi, Dinalankara, Wikum, Stupnikov, Aleksey, Lobo-Pereira, Francisco, Yip, Chi-Wai, Yasuzawa, Kayoko, Kondo, Naoto, Itoh, Masayoshi, Suzuki, Harukazu, Kasukawa, Takeya, Hon, Chung-Chau, de Hoon, Michiel J L, Shin, Jay W, Carninci, Piero, Jaffe, Andrew E, Leek, Jeffrey T, Favorov, Alexander, Franco, Gloria R, Langmead, Ben, Marchionni, Luigi

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Gene expression profiling in Entamoeba histolytica identifies key components in iron uptake and metabolism von Hernández-Cuevas, Nora Adriana, Weber, Christian, Hon, Chung-Chau, Guillen, Nancy

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The Human Cell Atlas: Technical approaches and challenges von Hon, Chung-Chau, Shin, Jay W, Carninci, Piero, Stubbington, Michael J T

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Exonuclease-mediated degradation of nascent RNA silences genes linked to severe malaria von Zhang, Qingfeng, Siegel, T. Nicolai, Martins, Rafael M., Wang, Fei, Cao, Jun, Gao, Qi, Cheng, Xiu, Jiang, Lubin, Hon, Chung-Chau, Scheidig-Benatar, Christine, Sakamoto, Hiroshi, Turner, Louise, Jensen, Anja T. R., Claes, Aurelie, Guizetti, Julien, Malmquist, Nicholas A., Scherf, Artur

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Extensive transcriptome analysis correlates the plasticity of Entamoeba histolytica pathogenesis to rapid phenotype changes depending on the environment von Weber, Christian, Koutero, Mikael, Dillies, Marie-Agnes, Varet, Hugo, Lopez-Camarillo, Cesar, Coppée, Jean Yves, Hon, Chung-Chau, Guillén, Nancy

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Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide von Santi-Rocca, Julien, Smith, Sherri, Weber, Christian, Pineda, Erika, Hon, Chung-Chau, Saavedra, Emma, Olivos-García, Alfonso, Rousseau, Sandrine, Dillies, Marie-Agnès, Coppée, Jean-Yves, Guillén, Nancy

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Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica von Hon, Chung-Chau, Weber, Christian, Sismeiro, Odile, Proux, Caroline, Koutero, Mikael, Deloger, Marc, Das, Sarbashis, Agrahari, Mridula, Dillies, Marie-Agnes, Jagla, Bernd, Coppee, Jean-Yves, Bhattacharya, Alok, Guillen, Nancy

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