OXPHOS remodeling in high-grade prostate cancer involves mtDNA mutations and increased succinate oxidation von Schöpf, Bernd, Weissensteiner, Hansi, Schäfer, Georg, Fazzini, Federica, Charoentong, Pornpimol, Naschberger, Andreas, Rupp, Bernhard, Fendt, Liane, Bukur, Valesca, Giese, Irina, Sorn, Patrick, Sant’Anna-Silva, Ana Carolina, Iglesias-Gonzalez, Javier, Sahin, Ugur, Kronenberg, Florian, Gnaiger, Erich, Klocker, Helmut

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Topography of cancer-associated immune cells in human solid tumors von Kather, Jakob Nikolas, Suarez-Carmona, Meggy, Charoentong, Pornpimol, Weis, Cleo-Aron, Hirsch, Daniela, Bankhead, Peter, Horning, Marcel, Ferber, Dyke, Kel, Ivan, Herpel, Esther, Schott, Sarah, Zörnig, Inka, Utikal, Jochen, Marx, Alexander, Gaiser, Timo, Brenner, Herrmann, Chang-Claude, Jenny, Hoffmeister, Michael, Jäger, Dirk, Halama, Niels

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Predicting survival from colorectal cancer histology slides using deep learning: A retrospective multicenter study von Kather, Jakob Nikolas, Krisam, Johannes, Charoentong, Pornpimol, Luedde, Tom, Herpel, Esther, Weis, Cleo-Aron, Gaiser, Timo, Marx, Alexander, Valous, Nektarios A, Ferber, Dyke, Jansen, Lina, Reyes-Aldasoro, Constantino Carlos, Zörnig, Inka, Jäger, Dirk, Brenner, Hermann, Chang-Claude, Jenny, Hoffmeister, Michael, Halama, Niels

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Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy von Angelova, Mihaela, Charoentong, Pornpimol, Hackl, Hubert, Fischer, Maria L, Snajder, Rene, Krogsdam, Anne M, Waldner, Maximilian J, Bindea, Gabriela, Mlecnik, Bernhard, Galon, Jerome, Trajanoski, Zlatko

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Targeting immune checkpoints potentiates immunoediting and changes the dynamics of tumor evolution von Efremova, Mirjana, Rieder, Dietmar, Klepsch, Victoria, Charoentong, Pornpimol, Finotello, Francesca, Hackl, Hubert, Hermann-Kleiter, Natascha, Löwer, Martin, Baier, Gottfried, Krogsdam, Anne, Trajanoski, Zlatko

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In Silico Modeling of Immunotherapy and Stroma-Targeting Therapies in Human Colorectal Cancer von Kather, Jakob Nikolas, Poleszczuk, Jan, Suarez-Carmona, Meggy, Krisam, Johannes, Charoentong, Pornpimol, Valous, Nektarios A, Weis, Cleo-Aron, Tavernar, Luca, Leiss, Florian, Herpel, Esther, Klupp, Fee, Ulrich, Alexis, Schneider, Martin, Marx, Alexander, Jäger, Dirk, Halama, Niels

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Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data von Finotello, Francesca, Mayer, Clemens, Plattner, Christina, Laschober, Gerhard, Rieder, Dietmar, Hackl, Hubert, Krogsdam, Anne, Loncova, Zuzana, Posch, Wilfried, Wilflingseder, Doris, Sopper, Sieghart, Ijsselsteijn, Marieke, Brouwer, Thomas P, Johnson, Douglas, Xu, Yaomin, Wang, Yu, Sanders, Melinda E, Estrada, Monica V, Ericsson-Gonzalez, Paula, Charoentong, Pornpimol, Balko, Justin, de Miranda, Noel Filipe da Cunha Carvalho, Trajanoski, Zlatko

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ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks von Bindea, Gabriela, Mlecnik, Bernhard, Hackl, Hubert, Charoentong, Pornpimol, Tosolini, Marie, Kirilovsky, Amos, Fridman, Wolf-Herman, Pagès, Franck, Trajanoski, Zlatko, Galon, Jérôme

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Intratumoral HPV16-Specific T Cells Constitute a Type I-Oriented Tumor Microenvironment to Improve Survival in HPV16-Driven Oropharyngeal Cancer von Welters, Marij J P, Ma, Wenbo, Santegoets, Saskia J A M, Goedemans, Renske, Ehsan, Ilina, Jordanova, Ekaterina S, van Ham, Vanessa J, van Unen, Vincent, Koning, Frits, van Egmond, Sylvia I, Charoentong, Pornpimol, Trajanoski, Zlatko, van der Velden, Lilly-Ann, van der Burg, Sjoerd H

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The thioredoxin system in breast cancer cell invasion and migration von Bhatia, Maneet, McGrath, Kelly L, Di Trapani, Giovanna, Charoentong, Pornpimol, Shah, Fenil, King, Mallory M, Clarke, Frank M, Tonissen, Kathryn F

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Coordination of Intratumoral Immune Reaction and Human Colorectal Cancer Recurrence von CAMUS, Matthieu, TOSOLINI, Marie, TRAJANOSKI, Zlatko, HERMAN FRIDMAN, Wolf, GALON, Jérôme, MLECNIK, Bernhard, PAGES, Franck, KIRILOVSKY, Amos, BERGER, Anne, COSTES, Anne, BINDEA, Gabriela, CHAROENTONG, Pornpimol, BRUNEVAL, Patrick

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Identification of microRNA-mRNA functional interactions in UVB-induced senescence of human diploid fibroblasts von Greussing, Ruth, Hackl, Matthias, Charoentong, Pornpimol, Pauck, Alexander, Monteforte, Rossella, Cavinato, Maria, Hofer, Edith, Scheideler, Marcel, Neuhaus, Michael, Micutkova, Lucia, Mueck, Christoph, Trajanoski, Zlatko, Grillari, Johannes, Jansen-Dürr, Pidder

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MediMer: a versatile do-it-yourself peptide-receptive MHC class I multimer platform for tumor neoantigen-specific T cell detection von Meyer, Marten, Parpoulas, Christina, Barthélémy, Titouan, Becker, Jonas P, Charoentong, Pornpimol, Lyu, Yanhong, Börsig, Selina, Bulbuc, Nadja, Tessmer, Claudia, Weinacht, Lisa, Ibberson, David, Schmidt, Patrick, Pipkorn, Rüdiger, Eichmüller, Stefan B, Steinberger, Peter, Lindner, Katharina, Poschke, Isabel, Platten, Michael, Fröhling, Stefan, Riemer, Angelika B, Hassel, Jessica C, Roberti, Maria Paula, Jäger, Dirk, Zörnig, Inka, Momburg, Frank

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Invasive margin tissue-resident macrophages of high CD163 expression impede responses to T cell-based immunotherapy von van Elsas, Marit J, Labrie, Camilla, Etzerodt, Anders, Charoentong, Pornpimol, van Stigt Thans, Jordi J C, Van Hall, Thorbald, van der Burg, Sjoerd H

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Recent computational image workflows advance the spatio-phenotypic analysis of the tumor immune microenvironment von Valous, Nektarios A., Charoentong, Pornpimol, Lenoir, Bénédicte, Zörnig, Inka, Jäger, Dirk

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Tumor-specific T cells support chemokine-driven spatial organization of intratumoral immune microaggregates needed for long survival von Abdulrahman, Ziena, Santegoets, Saskia J, Sturm, Gregor, Charoentong, Pornpimol, Ijsselsteijn, Marieke E, Somarakis, Antonios, Höllt, Thomas, Finotello, Francesca, Trajanoski, Zlatko, van Egmond, Sylvia L, Mustafa, Dana A M, Welters, Marij J P, de Miranda, Noel F C C, van der Burg, Sjoerd H

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Primary vulvar squamous cell carcinomas with high T cell infiltration and active immune signaling are potential candidates for neoadjuvant PD-1/PD-L1 immunotherapy von Kortekaas, Kim E, Santegoets, Saskia J, Tas, Liselotte, Ehsan, Ilina, Charoentong, Pornpimol, van Doorn, Helena C, van Poelgeest, Mariette I E, Mustafa, Dana A M, van der Burg, Sjoerd H

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Computational genomics tools for dissecting tumour–immune cell interactions von Hackl, Hubert, Charoentong, Pornpimol, Finotello, Francesca, Trajanoski, Zlatko

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Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade von Charoentong, Pornpimol, Finotello, Francesca, Angelova, Mihaela, Mayer, Clemens, Efremova, Mirjana, Rieder, Dietmar, Hackl, Hubert, Trajanoski, Zlatko

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Serum Autoantibodies in Chronic Prostate Inflammation in Prostate Cancer Patients von Schlick, Bettina, Massoner, Petra, Lueking, Angelika, Charoentong, Pornpimol, Blattner, Mirjam, Schaefer, Georg, Marquart, Klaus, Theek, Carmen, Amersdorfer, Peter, Zielinski, Dirk, Kirchner, Matthias, Trajanoski, Zlatko, Rubin, Mark A, Müllner, Stefan, Schulz-Knappe, Peter, Klocker, Helmut

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