Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis von Challacombe, Jean F, Hesse, Cedar N, Bramer, Lisa M, McCue, Lee Ann, Lipton, Mary, Purvine, Samuel, Nicora, Carrie, Gallegos-Graves, La Verne, Porras-Alfaro, Andrea, Kuske, Cheryl R

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Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae von Chun, Jongsik, Grim, Christopher J, Hasan, Nur A, Lee, Je Hee, Choi, Seon Young, Haley, Bradd J, Taviani, Elisa, Jeon, Yoon-Seong, Kim, Dong Wook, Lee, Jae-Hak, Brettin, Thomas S, Bruce, David C, Challacombe, Jean F, Detter, J. Chris, Han, Cliff S, Munk, A. Christine, Chertkov, Olga, Meincke, Linda, Saunders, Elizabeth, Walters, Ronald A, Huq, Anwar, Nair, G. Balakrish, Colwell, Rita R

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Shared features of cryptic plasmids from environmental and pathogenic Francisella species von Challacombe, Jean F, Pillai, Segaran, Kuske, Cheryl R

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A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production von McKinlay, James B, Laivenieks, Maris, Schindler, Bryan D, McKinlay, Anastasia A, Siddaramappa, Shivakumara, Challacombe, Jean F, Lowry, Stephen R, Clum, Alicia, Lapidus, Alla L, Burkhart, Kirk B, Harkins, Victoria, Vieille, Claire

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Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species von Hasan, Nur A, Grim, Christopher J, Lipp, Erin K, Rivera, Irma N G, Chun, Jongsik, Haley, Bradd J, Taviani, Elisa, Choi, Seon Young, Hoq, Mozammel, Munk, A Christine, Brettin, Thomas S, Bruce, David, Challacombe, Jean F, Detter, J Chris, Han, Cliff S, Eisen, Jonathan A, Huq, Anwar, Colwell, Rita R

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Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii von Xie, Gary, Bruce, David C, Challacombe, Jean F, Chertkov, Olga, Detter, John C, Gilna, Paul, Han, Cliff S, Lucas, Susan, Misra, Monica, Myers, Gerald L, Richardson, Paul, Tapia, Roxanne, Thayer, Nina, Thompson, Linda S, Brettin, Thomas S, Henrissat, Bernard, Wilson, David B, McBride, Mark J

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Biological consequences of ancient gene acquisition and duplication in the large genome of Candidatus Solibacter usitatus Ellin6076 von Challacombe, Jean F, Eichorst, Stephanie A, Hauser, Loren, Land, Miriam, Xie, Gary, Kuske, Cheryl R

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Complete genome of the cellulolytic thermophile Acidothermus cellulolyticus 11B provides insights into its ecophysiological and evolutionary adaptations von Barabote, Ravi D, Xie, Gary, Leu, David H, Normand, Philippe, Necsulea, Anamaria, Daubin, Vincent, Médigue, Claudine, Adney, William S, Xu, Xin Clare, Lapidus, Alla, Parales, Rebecca E, Detter, Chris, Pujic, Petar, Bruce, David, Lavire, Celine, Challacombe, Jean F, Brettin, Thomas S, Berry, Alison M

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Interrogation of the Burkholderia pseudomallei genome to address differential virulence among isolates von Challacombe, Jean F, Stubben, Chris J, Klimko, Christopher P, Welkos, Susan L, Kern, Steven J, Bozue, Joel A, Worsham, Patricia L, Cote, Christopher K, Wolfe, Daniel N

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Common Ancestry and Novel Genetic Traits of Francisella novicida-Like Isolates from North America and Australia as Revealed by Comparative Genomic Analyses von SIDDARAMAPPA, Shivakumara, CHALLACOMBE, Jean F, PETERSEN, Jeannine M, PILLAI, Segaran, HOGG, Geoff, KUSKE, Cheryl R

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Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae von Haley, Bradd J, Grim, Christopher J, Hasan, Nur A, Choi, Seon-Young, Chun, Jongsik, Brettin, Thomas S, Bruce, David C, Challacombe, Jean F, Detter, J Chris, Han, Cliff S, Huq, Anwar, Colwell, Rita R

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Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses von Siddaramappa, Shivakumara, Challacombe, Jean F, Duncan, Alison J, Gillaspy, Allison F, Carson, Matthew, Gipson, Jenny, Orvis, Joshua, Zaitshik, Jeremy, Barnes, Gentry, Bruce, David, Chertkov, Olga, Detter, J Chris, Han, Cliff S, Tapia, Roxanne, Thompson, Linda S, Dyer, David W, Inzana, Thomas J

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A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T von Siddaramappa, Shivakumara, Challacombe, Jean F, Decastro, Rosana E, Pfeiffer, Friedhelm, Sastre, Diego E, Giménez, María I, Paggi, Roberto A, Detter, John C, Davenport, Karen W, Goodwin, Lynne A, Kyrpides, Nikos, Tapia, Roxanne, Pitluck, Samuel, Lucas, Susan, Woyke, Tanja, Maupin-Furlow, Julie A

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Genetic diversity within the genus Francisella as revealed by comparative analyses of the genomes of two North American isolates from environmental sources von Siddaramappa, Shivakumara, Challacombe, Jean F, Petersen, Jeannine M, Pillai, Segaran, Kuske, Cheryl R

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Comparative genomics of clinical and environmental Vibrio mimicus von Hasan, Nur A., Grim, Christopher J., Haley, Bradd J., Chun, Jongsik, Alam, Munirul, Taviani, Elisa, Hoq, Mozammel, Munk, A. Christine, Saunders, Elizabeth, Brettin, Thomas S., Bruce, David C., Challacombe, Jean F., Detter, J. Chris, Han, Cliff S., Xie, Gary, Nair, G. Balakrish, Huq, Anwar, Colwell, Rita R.

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Pulling needles out of a haystack: Subtractive Community Metatranscriptomics retrieves anaerobic o-xylene degradation pathway genes out of a mixed microbial culture von Rossmassler, Karen, Challacombe, Jean F., De Long, Susan K.

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Whole-Genome Relationships among Francisella Bacteria of Diverse Origins Define New Species and Provide Specific Regions for Detection von Challacombe, Jean F, Petersen, Jeannine M, Gallegos-Graves, La Verne, Hodge, David, Pillai, Segaran, Kuske, Cheryl R

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Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils von Ward, Naomi L, Challacombe, Jean F, Janssen, Peter H, Henrissat, Bernard, Coutinho, Pedro M, Wu, Martin, Xie, Gary, Haft, Daniel H, Sait, Michelle, Badger, Jonathan, Barabote, Ravi D, Bradley, Brent, Brettin, Thomas S, Brinkac, Lauren M, Bruce, David, Creasy, Todd, Daugherty, Sean C, Davidsen, Tanja M, DeBoy, Robert T, Detter, J. Chris, Dodson, Robert J, Durkin, A. Scott, Ganapathy, Anuradha, Gwinn-Giglio, Michelle, Han, Cliff S, Khouri, Hoda, Kiss, Hajnalka, Kothari, Sagar P, Madupu, Ramana, Nelson, Karen E, Nelson, William C, Paulsen, Ian, Penn, Kevin, Ren, Qinghu, Rosovitz, M.J, Selengut, Jeremy D, Shrivastava, Susmita, Sullivan, Steven A, Tapia, Roxanne, Thompson, L. Sue, Watkins, Kisha L, Yang, Qi, Yu, Chunhui, Zafar, Nikhat, Zhou, Liwei, Kuske, Cheryl R

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The Complete Genome Sequence of Bacillus thuringiensis Al Hakam von CHALLACOMBE, Jean F, ALTHERR, Michael R, CLELAND, Cathy, DIMITRIJEVIC, Mira, DOGGETT, Norman A, FAWCETT, John J, GLAVINA, Tijana, GOODWIN, Lynne A, GREEN, Lance D, HAN, Cliff S, HILL, Karen K, HITCHCOCK, Penny, XIE, Gary, JACKSON, Paul J, KEIM, Paul, RAMESH KEWALRAMANI, Avinash, LONGMIRE, Jon, LUCAS, Susan, MATATTI, Stephanie, MARINEZ, Diego, MCMURRY, Kim, MEINCKE, Linda J, MISRA, Monica, BHOTIKA, Smriti S, MOSEMAN, Bernice L, MUNDT, Mark, MUNK, A. Christine, OKINAKA, Richard T, PARSON-QUINTANA, B, REILLY, Lee Philip, RICHARDSON, Paul, ROBINSON, Donna L, SAUNDERS, Elizabeth, TAPIA, Roxanne, BROWN, Nancy, TESMER, Judith G, THAYER, Nina, THOMPSON, Linda S, TICE, Hope, TICKNOR, Lawrence O, WILLS, Patti L, GILNA, Paul, BRETTIN, Thomas S, BRUCE, David, CAMPBELL, Connie S, CAMPBELL, Mary L, JIN CHEN, CHERTKOV, Olga

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Complete Genome Sequence of Haemophilus somnus (Histophilus somni) Strain 129Pt and Comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd von CHALLACOMBE, Jean F, DUNCAN, A. J, THAYER, Nina, XIE, Gary, INZANA, Thomas J, BRETTIN, Thomas S, BRUCE, David, CHERTKOV, Olga, DETTER, J. Chris, HAN, Cliff S, MISRA, Monica, RICHARDSON, Paul, TAPIA, Roxanne

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