Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation von Westholm, Jakub O, Miura, Pedro, Olson, Sara, Shenker, Sol, Joseph, Brian, Sanfilippo, Piero, Celniker, Susan E, Graveley, Brenton R, Lai, Eric C

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An Extracellular Interactome of Immunoglobulin and LRR Proteins Reveals Receptor-Ligand Networks von Özkan, Engin, Carrillo, Robert A., Eastman, Catharine L., Weiszmann, Richard, Waghray, Deepa, Johnson, Karl G., Zinn, Kai, Celniker, Susan E., Garcia, K. Christopher

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A Protein Complex Network of Drosophila melanogaster von Guruharsha, K.G., Rual, Jean-François, Zhai, Bo, Mintseris, Julian, Vaidya, Pujita, Vaidya, Namita, Beekman, Chapman, Wong, Christina, Rhee, David Y., Cenaj, Odise, McKillip, Emily, Shah, Saumini, Stapleton, Mark, Wan, Kenneth H., Yu, Charles, Parsa, Bayan, Carlson, Joseph W., Chen, Xiao, Kapadia, Bhaveen, VijayRaghavan, K., Gygi, Steven P., Celniker, Susan E., Obar, Robert A., Artavanis-Tsakonas, Spyros

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Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks von Wu, Siqi, Joseph, Antony, Hammonds, Ann S., Celniker, Susan E., Yu, Bin, Frise, Erwin

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Genome-wide identification of zero nucleotide recursive splicing in Drosophila von Duff, Michael O., Olson, Sara, Wei, Xintao, Garrett, Sandra C., Osman, Ahmad, Bolisetty, Mohan, Plocik, Alex, Celniker, Susan E., Graveley, Brenton R.

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Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes von Markstein, Michele, Pitsouli, Chrysoula, Villalta, Christians, Celniker, Susan E, Perrimon, Norbert

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Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance von Chen, Kun, Luan, Xiaoting, Liu, Qisha, Wang, Jianwei, Chang, Xinxia, Snijders, Antoine M., Mao, Jian-Hua, Secombe, Julie, Dan, Zhou, Chen, Jian-Huan, Wang, Zibin, Dong, Xiao, Qiu, Chen, Chang, Xiaoai, Zhang, Dong, Celniker, Susan E., Liu, Xingyin

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The Release 6 reference sequence of the Drosophila melanogaster genome von Hoskins, Roger A, Carlson, Joseph W, Wan, Kenneth H, Park, Soo, Mendez, Ivonne, Galle, Samuel E, Booth, Benjamin W, Pfeiffer, Barret D, George, Reed A, Svirskas, Robert, Krzywinski, Martin, Schein, Jacqueline, Accardo, Maria Carmela, Damia, Elisabetta, Messina, Giovanni, Méndez-Lago, María, de Pablos, Beatriz, Demakova, Olga V, Andreyeva, Evgeniya N, Boldyreva, Lidiya V, Marra, Marco, Carvalho, A Bernardo, Dimitri, Patrizio, Villasante, Alfredo, Zhimulev, Igor F, Rubin, Gerald M, Karpen, Gary H, Celniker, Susan E

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Lessons from modENCODE von Brown, James B, Celniker, Susan E

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Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain von Dachet, Fabien, Brown, James B., Valyi-Nagy, Tibor, Narayan, Kunwar D., Serafini, Anna, Boley, Nathan, Gingeras, Thomas R., Celniker, Susan E., Mohapatra, Gayatry, Loeb, Jeffrey A.

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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila von Smibert, Peter, Miura, Pedro, Westholm, Jakub O., Shenker, Sol, May, Gemma, Duff, Michael O., Zhang, Dayu, Eads, Brian D., Carlson, Joe, Brown, James B., Eisman, Robert C., Andrews, Justen, Kaufman, Thomas, Cherbas, Peter, Celniker, Susan E., Graveley, Brenton R., Lai, Eric C.

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Global analysis of patterns of gene expression during Drosophila embryogenesis von Tomancak, Pavel, Berman, Benjamin P, Beaton, Amy, Weiszmann, Richard, Kwan, Elaine, Hartenstein, Volker, Celniker, Susan E, Rubin, Gerald M

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Tools for neuroanatomy and neurogenetics in Drosophila von Pfeiffer, Barret D, Jenett, Arnim, Hammonds, Ann S, Ngo, Teri -T.B, Misra, Sima, Murphy, Christine, Scully, Audra, Carlson, Joseph W, Wan, Kenneth H, Laverty, Todd R, Mungall, Chris, Svirskas, Rob, Kadonaga, James T, Doe, Chris Q, Eisen, Michael B, Celniker, Susan E, Rubin, Gerald M

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A new platform for ultra-high dose rate radiobiological research using the BELLA PW laser proton beamline von Bin, Jianhui, Obst-Huebl, Lieselotte, Mao, Jian-Hua, Nakamura, Kei, Geulig, Laura D., Chang, Hang, Ji, Qing, He, Li, De Chant, Jared, Kober, Zachary, Gonsalves, Anthony J., Bulanov, Stepan, Celniker, Susan E., Schroeder, Carl B., Geddes, Cameron G. R., Esarey, Eric, Simmons, Blake A., Schenkel, Thomas, Blakely, Eleanor A., Steinke, Sven, Snijders, Antoine M.

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Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy von Cheng, Qiong, Kazemian, Majid, Pham, Hannah, Blatti, Charles, Celniker, Susan E, Wolfe, Scot A, Brodsky, Michael H, Sinha, Saurabh

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DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila von Fisher, William W., Li, Jingyi Jessica, Hammonds, Ann S., Brown, James B., Pfeiffer, Barret D., Weiszmann, Richard, MacArthur, Stewart, Thomas, Sean, Stamatoyannopoulos, John A., Eisen, Michael B., Bickel, Peter J., Biggin, Mark D., Celniker, Susan E.

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Transcription Factor Networks in Drosophila melanogaster von Rhee, David Y., Cho, Dong-Yeon, Zhai, Bo, Slattery, Matthew, Ma, Lijia, Mintseris, Julian, Wong, Christina Y., White, Kevin P., Celniker, Susan E., Przytycka, Teresa M., Gygi, Steven P., Obar, Robert A., Artavanis-Tsakonas, Spyros

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Genome-wide analysis of promoter architecture in Drosophila melanogaster von Hoskins, Roger A, Landolin, Jane M, Brown, James B, Sandler, Jeremy E, Takahashi, Hazuki, Lassmann, Timo, Yu, Charles, Booth, Benjamin W, Zhang, Dayu, Wan, Kenneth H, Yang, Li, Boley, Nathan, Andrews, Justen, Kaufman, Thomas C, Graveley, Brenton R, Bickel, Peter J, Carninci, Piero, Carlson, Joseph W, Celniker, Susan E

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Genetic and metabolic links between the murine microbiome and memory von Mao, Jian-Hua, Kim, Young-Mo, Zhou, Yan-Xia, Hu, Dehong, Zhong, Chenhan, Chang, Hang, Brislawn, Colin, Langley, Sasha, Wang, Yunshan, Peisl, B. Y. Loulou, Celniker, Susan E., Threadgill, David W., Wilmes, Paul, Orr, Galya, Metz, Thomas O., Jansson, Janet K., Snijders, Antoine M.

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Molecular and functional characterization of the Drosophila melanogaster conserved smORFome von Bosch, Justin A., Keith, Nathan, Escobedo, Felipe, Fisher, William W., LaGraff, James Thai, Rabasco, Jorden, Wan, Kenneth H., Weiszmann, Richard, Wu, Yulun, Hu, Yanhui, Kondo, Shu, Brown, James B., Perrimon, Norbert, Celniker, Susan E.

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