The Discovery of XY Sex Chromosomes in a Boa and Python von Gamble, Tony, Castoe, Todd A., Nielsen, Stuart V., Banks, Jaison L., Card, Daren C., Schield, Drew R., Schuett, Gordon W., Booth, Warren

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Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake von Castoe, Todd A, Poole, Alexander W, de Koning, A P Jason, Jones, Kenneth L, Tomback, Diana F, Oyler-McCance, Sara J, Fike, Jennifer A, Lance, Stacey L, Streicher, Jeffrey W, Smith, Eric N, Pollock, David D

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The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes von Schield, Drew R, Card, Daren C, Hales, Nicole R, Perry, Blair W, Pasquesi, Giulia M, Blackmon, Heath, Adams, Richard H, Corbin, Andrew B, Smith, Cara F, Ramesh, Balan, Demuth, Jeffery P, Betrán, Esther, Tollis, Marc, Meik, Jesse M, Mackessy, Stephen P, Castoe, Todd A

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Phylogenetic relationships among Staphylococcus species and refinement of cluster groups based on multilocus data von Lamers, Ryan P, Muthukrishnan, Gowrishankar, Castoe, Todd A, Tafur, Sergio, Cole, Alexander M, Parkinson, Christopher L

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Genome-wide data implicate terminal fusion automixis in king cobra facultative parthenogenesis von Card, Daren C., Vonk, Freek J., Smalbrugge, Sterrin, Casewell, Nicholas R., Wüster, Wolfgang, Castoe, Todd A., Schuett, Gordon W., Booth, Warren

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Snakes on a plain: biotic and abiotic factors determine venom compositional variation in a wide-ranging generalist rattlesnake von Smith, Cara F, Nikolakis, Zachary L, Ivey, Kathleen, Perry, Blair W, Schield, Drew R, Balchan, Neil R, Parker, Joshua, Hansen, Kirk C, Saviola, Anthony J, Castoe, Todd A, Mackessy, Stephen P

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Evidence for an ancient adaptive episode of convergent molecular evolution von Castoe, Todd A, de Koning, A.P. Jason, Kim, Hyun-Min, Gu, Wanjun, Noonan, Brice P, Naylor, Gavin, Jiang, Zhi J, Parkinson, Christopher L, Pollock, David D

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Adaptive evolution and functional redesign of core metabolic proteins in snakes von Castoe, Todd A, Jiang, Zhi J, Gu, Wanjun, Wang, Zhengyuan O, Pollock, David D

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EpiRADseq: scalable analysis of genomewide patterns of methylation using next‐generation sequencing von Schield, Drew R., Walsh, Matthew R., Card, Daren C., Andrew, Audra L., Adams, Richard H., Castoe, Todd A., Bunce, Michael

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Historical Contingency in a Multigene Family Facilitates Adaptive Evolution of Toxin Resistance von McGlothlin, Joel W., Kobiela, Megan E., Feldman, Chris R., Castoe, Todd A., Geffeney, Shana L., Hanifin, Charles T., Toledo, Gabriela, Vonk, Freek J., Richardson, Michael K., Brodie, Edmund D., Pfrender, Michael E., Brodie, Edmund D.

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Growth and stress response mechanisms underlying post-feeding regenerative organ growth in the Burmese python von Andrew, Audra L, Perry, Blair W, Card, Daren C, Schield, Drew R, Ruggiero, Robert P, McGaugh, Suzanne E, Choudhary, Amit, Secor, Stephen M, Castoe, Todd A

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Comparative phylogeography of pitvipers suggests a consensus of ancient Middle American highland biogeography von Castoe, Todd A, Daza, Juan M, Smith, Eric N, Sasa, Mahmood M, Kuch, Ulrich, Campbell, Jonathan A, Chippindale, Paul T, Parkinson, Christopher L

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LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders von Sun, Cheng, Shepard, Donald B, Chong, Rebecca A, López Arriaza, José, Hall, Kathryn, Castoe, Todd A, Feschotte, Cédric, Pollock, David D, Mueller, Rachel Lockridge

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Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia von Shortt, Jonathan A, Card, Daren C, Schield, Drew R, Liu, Yang, Zhong, Bo, Castoe, Todd A, Carlton, Elizabeth J, Pollock, David D

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Comparison of Normalization Methods for Construction of Large, Multiplex Amplicon Pools for Next-Generation Sequencing von Harris, J. Kirk, Sahl, Jason W, Castoe, Todd A, Wagner, Brandie D, Pollock, David D, Spear, John R

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Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes von Castoe, Todd A, de Koning, Jason A P, Hall, Kathryn T, Yokoyama, Ken D, Gu, Wanjun, Smith, Eric N, Feschotte, Cédric, Uetz, Peter, Ray, David A, Dobry, Jason, Bogden, Robert, Mackessy, Stephen P, Bronikowski, Anne M, Warren, Wesley C, Secor, Stephen M, Pollock, David D

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Supergene validation: A model-based protocol for assessing the accuracy of non-model-based supergene methods von Adams, Richard H., Castoe, Todd A.

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PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments von Adams, Richard H, Castoe, Todd A, DeGiorgio, Michael

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Statistical binning leads to profound model violation due to gene tree error incurred by trying to avoid gene tree error von Adams, Richard H., Castoe, Todd A.

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Sciurid phylogeny and the paraphyly of Holarctic ground squirrels ( Spermophilus) von Herron, Matthew D., Castoe, Todd A., Parkinson, Christopher L.

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