QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations von Takagi, Hiroki, Abe, Akira, Yoshida, Kentaro, Kosugi, Shunichi, Natsume, Satoshi, Mitsuoka, Chikako, Uemura, Aiko, Utsushi, Hiroe, Tamiru, Muluneh, Takuno, Shohei, Innan, Hideki, Cano, Liliana M., Kamoun, Sophien, Terauchi, Ryohei

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nQuire: a statistical framework for ploidy estimation using next generation sequencing von Weiß, Clemens L, Pais, Marina, Cano, Liliana M, Kamoun, Sophien, Burbano, Hernán A

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Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans von Raffaele, Sylvain, Win, Joe, Cano, Liliana M, Kamoun, Sophien

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MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii von Takagi, Hiroki, Uemura, Aiko, Yaegashi, Hiroki, Tamiru, Muluneh, Abe, Akira, Mitsuoka, Chikako, Utsushi, Hiroe, Natsume, Satoshi, Kanzaki, Hiroyuki, Matsumura, Hideo, Saitoh, Hiromasa, Yoshida, Kentaro, Cano, Liliana M., Kamoun, Sophien, Terauchi, Ryohei

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Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi von Saunders, Diane G.O, Win, Joe, Cano, Liliana M, Szabo, Les J, Kamoun, Sophien, Raffaele, Sylvain

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Ancient class of translocated oomycete effectors targets the host nucleus von Schornack, Sebastian, van Damme, Mireille, Bozkurt, Tolga O., Cano, Liliana M., Smoker, Matthew, Thines, Marco, Gaulin, Elodie, Kamoun, Sophien, Huitema, Edgar

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Effector Specialization in a Lineage of the Irish Potato Famine Pathogen von Dong, Suomeng, Stam, Remco, Cano, Liliana M., Song, Jing, Sklenar, Jan, Yoshida, Kentaro, Bozkurt, Tolga O., Oliva, Ricardo, Liu, Zhenyu, Tian, Miaoying, Win, Joe, Banfield, Mark J., Jones, Alexandra M. E., van der Hoorn, Renier A. L., Kamoun, Sophien

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Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage von Raffaele, Sylvain, Farrer, Rhys A, Cano, Liliana M, Studholme, David J, MacLean, Daniel, Thines, Marco, Jiang, Rays H.Y, Zody, Michael C, Kunjeti, Sridhara G, Donofrio, Nicole M, Meyers, Blake C, Nusbaum, Chad, Kamoun, Sophien

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Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface von Bozkurt, Tolga O., Schornack, Sebastian, Win, Joe, Shindo, Takayuki, Ilyas, Muhammad, Oliva, Ricardo, Cano, Liliana M., Jones, Alexandra M. E., Huitema, Edgar, van der Hoorn, Renier A. L., Kamoun, Sophien

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The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine von Yoshida, Kentaro, Schuenemann, Verena J, Cano, Liliana M, Pais, Marina, Mishra, Bagdevi, Sharma, Rahul, Lanz, Chirsta, Martin, Frank N, Kamoun, Sophien, Krause, Johannes, Thines, Marco, Weigel, Detlef, Burbano, Hernán A

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Rerouting of Plant Late Endocytic Trafficking Toward a Pathogen Interface von Bozkurt, Tolga O., Belhaj, Khaoula, Dagdas, Yasin F., Chaparro‐Garcia, Angela, Wu, Chih‐Hang, Cano, Liliana M., Kamoun, Sophien

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Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum von Armitage, Andrew D, Lysøe, Erik, Nellist, Charlotte F, Lewis, Laura A, Cano, Liliana M, Harrison, Richard J, Brurberg, May B

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Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum von Kasuga, Takao, Bui, Mai, Bernhardt, Elizabeth, Swiecki, Tedmund, Aram, Kamyar, Cano, Liliana M, Webber, Joan, Brasier, Clive, Press, Caroline, Grünwald, Niklaus J, Rizzo, David M, Garbelotto, Matteo

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Qualitative and Quantitative Late Blight Resistance in the Potato Cultivar Sarpo Mira Is Determined by the Perception of Five Distinct RXLR Effectors von RIETMAN, Hendrik, BIJSTERBOSCH, Gerard, CANO, Liliana M, LEE, Heung-Ryul, VOSSEN, Jack H, JACOBSEN, Evert, VISSER, Richard G. F, KAMOUN, Sophien, VLEESHOUWERS, Vivianne G. A. A

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Genomic and transcriptomic analyses of Phytophthora cinnamomi reveal complex genome architecture, expansion of pathogenicity factors, and host-dependent gene expression profiles von Shands, Aidan C, Xu, Guangyuan, Belisle, Rodger J, Seifbarghi, Shirin, Jackson, Natasha, Bombarely, Aureliano, Cano, Liliana M, Manosalva, Patricia M

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Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes von Win, Joe, Morgan, William, Bos, Jorunn, Krasileva, Ksenia V, Cano, Liliana M, Chaparro-Garcia, Angela, Ammar, Randa, Staskawicz, Brian J, Kamoun, Sophien

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Temporal and spatial detection of Candidatus Liberibacter asiaticus putative effector transcripts during interaction with Huanglongbing-susceptible, -tolerant, and -resistant citru... von Shi, Qingchun, Pitino, Marco, Zhang, Shujian, Krystel, Joseph, Cano, Liliana M, Shatters, Jr, Robert G, Hall, David G, Stover, Ed

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Gene expression polymorphism underpins evasion of host immunity in an asexual lineage of the Irish potato famine pathogen von Pais, Marina, Yoshida, Kentaro, Giannakopoulou, Artemis, Pel, Mathieu A, Cano, Liliana M, Oliva, Ricardo F, Witek, Kamil, Lindqvist-Kreuze, Hannele, Vleeshouwers, Vivianne G A A, Kamoun, Sophien

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Genomics analysis of Aphanomyces spp. identifies a new class of oomycete effector associated with host adaptation von Gaulin, Elodie, Pel, Michiel J C, Camborde, Laurent, San-Clemente, Hélène, Courbier, Sarah, Dupouy, Marie-Alexane, Lengellé, Juliette, Veyssiere, Marine, Le Ru, Aurélie, Grandjean, Frédéric, Cordaux, Richard, Moumen, Bouziane, Gilbert, Clément, Cano, Liliana M, Aury, Jean-Marc, Guy, Julie, Wincker, Patrick, Bouchez, Olivier, Klopp, Christophe, Dumas, Bernard

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A Recent Expansion of the RXLR Effector Gene Avrblb2 Is Maintained in Global Populations of Phytophthora infestans Indicating Different Contributions to Virulence von Oliva, Ricardo F, Cano, Liliana M, Raffaele, Sylvain, Win, Joe, Bozkurt, Tolga O, Belhaj, Khaoula, Oh, Sang-Keun, Thines, Marco, Kamoun, Sophien

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