R2DT is a framework for predicting and visualising RNA secondary structure using templates von Sweeney, Blake A., Hoksza, David, Nawrocki, Eric P., Ribas, Carlos Eduardo, Madeira, Fábio, Cannone, Jamie J., Gutell, Robin, Maddala, Aparna, Meade, Caeden D., Williams, Loren Dean, Petrov, Anton S., Chan, Patricia P., Lowe, Todd M., Finn, Robert D., Petrov, Anton I.

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The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum von Feagin, Jean E, Harrell, Maria Isabel, Lee, Jung C, Coe, Kevin J, Sands, Bryan H, Cannone, Jamie J, Tami, Germaine, Schnare, Murray N, Gutell, Robin R

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs von Cannone, Jamie J, Subramanian, Sankar, Schnare, Murray N, Collett, James R, D'Souza, Lisa M, Du, Yushi, Feng, Brian, Lin, Nan, Madabusi, Lakshmi V, Müller, Kirsten M, Pande, Nupur, Shang, Zhidi, Yu, Nan, Gutell, Robin R

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Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction von Doshi, Kishore J, Cannone, Jamie J, Cobaugh, Christian W, Gutell, Robin R

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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases von Sweeney, Blake A, Petrov, Anton I, Ribas, Carlos E, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Seemann, Stefan E, Gorodkin, Jan, Cannone, Jamie J, Gutell, Robin R, Kay, Simon, Marygold, Steven, dos Santos, Gil, Frankish, Adam, Mudge, Jonathan M, Barshir, Ruth, Fishilevich, Simon, Chan, Patricia P, Lowe, Todd M, Seal, Ruth, Bruford, Elspeth, Panni, Simona, Porras, Pablo, Karagkouni, Dimitra, Hatzigeorgiou, Artemis G, Ma, Lina, Zhang, Zhang, Volders, Pieter-Jan, Mestdagh, Pieter, Griffiths-Jones, Sam, Fromm, Bastian, Peterson, Kevin J, Kalvari, Ioanna, Nawrocki, Eric P, Petrov, Anton S, Weng, Shuai, Bouchard-Bourelle, Philia, Scott, Michelle, Lui, Lauren M, Hoksza, David, Lovering, Ruth C, Kramarz, Barbara, Mani, Prita, Ramachandran, Sridhar, Weinberg, Zasha

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Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransp... von Gillespie, J.J, Johnston, J.S, Cannone, J.J, Gutell, R.R

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RNAcentral: a hub of information for non-coding RNA sequences von Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

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Specificity between Lactobacilli and Hymenopteran Hosts Is the Exception Rather than the Rule von MCFREDERICK, Quinn S, CANNONE, Jamie J, GUTELL, Robin R, KELLNER, Katrin, PLOWES, Robert M, MUELLER, Ulrich G

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Structure of the Mammalian 80S Ribosome at 8.7 Å Resolution von Chandramouli, Preethi, Topf, Maya, Ménétret, Jean-François, Eswar, Narayanan, Cannone, Jamie J., Gutell, Robin R., Sali, Andrej, Akey, Christopher W.

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The accuracy of ribosomal RNA comparative structure models von Gutell, Robin R, Lee, Jung C, Cannone, Jamie J

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ITS secondary structure derived from comparative analysis: implications for sequence alignment and phylogeny of the Asteraceae von Goertzen, Leslie R., Cannone, Jamie J., Gutell, Robin R., Jansen, Robert K.

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Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae) von Maddison, David R., Moore, Wendy, Baker, Michael D., Ellis, Tana M., Ober, Karen A., Cannone, Jamie J, Gutell, Robin R.

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The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction von Cannone, Jamie, Subramanian, Sankar, Schnare, Murray, Collett, James, D'Souza, Lisa, Du, Yushi, Feng, Brian, Lin, Nan, Madabusi, Lakshmi, Müller, Kirsten, Pande, Nupur, Shang, Zhidi, Yu, Nan, Gutell, Robin

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Modeling a Minimal Ribosome Based on Comparative Sequence Analysis von Mears, Jason A., Cannone, Jamie J., Stagg, Scott M., Gutell, Robin R., Agrawal, Rajendra K., Harvey, Stephen C.

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Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes von Qui, Y.L, Dombrovska, O, Lee, J, Li, L, Whitlock, B.A, Bernasconi-Quadroni, F, Rest, J.S, Davis, C.C, Borsch, T, Hilu, K.W

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Fragmentation of the large subunit ribosomal RNA gene in oyster mitochondrial genomes von Milbury, Coren A, Lee, Jung C, Cannone, Jamie J, Gaffney, Patrick M, Gutell, Robin R

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A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera: Chrysomelidae; Galerucinae) von Gillespie, J., Cannone, J., Gutell, R., Cognato, A.

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The Lonepair Triloop: A New Motif in RNA Structure von Lee, Jung C, Cannone, Jamie J, Gutell, Robin R

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RNAcentral: a hub of information for non-coding RNA sequences von Sweeney, Blake A, Petrov, Anton I, Burkov, Boris, Finn, Robert D, Bateman, Alex, Szymanski, Maciej, Karlowski, Wojciech M, Gorodkin, Jan, Seemann, Stefan E, Cannone, Jamie J, Gutell, Robin R, Fey, Petra, Basu, Siddhartha, Kay, Simon, Cochrane, Guy, Billis, Kostantinos, Emmert, David, Marygold, Steven J, Huntley, Rachael P, Lovering, Ruth C, Frankish, Adam, Chan, Patricia P, Lowe, Todd M, Bruford, Elspeth, Seal, Ruth, Vandesompele, Jo, Volders, Pieter-Jan, Paraskevopoulou, Maria, Ma, Lina, Zhang, Zhang, Griffiths-Jones, Sam, Bujnicki, Janusz M, Boccaletto, Pietro, Blake, Judith A, Bult, Carol J, Chen, Runsheng, Zhao, Yi, Wood, Valerie, Rutherford, Kim, Rivas, Elena, Cole, James, Laulederkind, Stanley J F, Shimoyama, Mary, Gillespie, Marc E, Orlic-Milacic, Marija, Kalvari, Ioanna, Nawrocki, Eric, Engel, Stacia R, Cherry, J Michael, Team, SILVA, Berardini, Tanya Z, Hatzigeorgiou, Artemis, Karagkouni, Dimitra, Howe, Kevin, Davis, Paul, Dinger, Marcel, He, Shunmin, Yoshihama, Maki, Kenmochi, Naoya, Stadler, Peter F, Williams, Kelly P

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A story: unpaired adenosine bases in ribosomal RNAs von Gutell, R.R, Cannone, J.J, Shang, Z, Du, Y, Serra, M.J

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