The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013 von Vizcaíno, Juan Antonio, Côté, Richard G, Csordas, Attila, Dianes, José A, Fabregat, Antonio, Foster, Joseph M, Griss, Johannes, Alpi, Emanuele, Birim, Melih, Contell, Javier, O'Kelly, Gavin, Schoenegger, Andreas, Ovelleiro, David, Pérez-Riverol, Yasset, Reisinger, Florian, Ríos, Daniel, Wang, Rui, Hermjakob, Henning

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Data-driven development and validation of a nutrient-based score to measure nutritional balance of meals in the Philippines von Mainardi, Fabio, Côté, Richard G, Silber, Nele Kristin, Plestina, Roko, Ferrer, Eldridge, Angeles-Agdeppa, Imelda

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PRIDE Inspector: a tool to visualize and validate MS proteomics data von Wang, Rui, Fabregat, Antonio, Ríos, Daniel, Ovelleiro, David, Foster, Joseph M, Côté, Richard G, Griss, Johannes, Csordas, Attila, Perez-Riverol, Yasset, Reisinger, Florian, Hermjakob, Henning, Martens, Lennart, Vizcaíno, Juan Antonio

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The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases von Côté, Richard G, Jones, Philip, Martens, Lennart, Kerrien, Samuel, Reisinger, Florian, Lin, Quan, Leinonen, Rasko, Apweiler, Rolf, Hermjakob, Henning

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Improvements in the Protein Identifier Cross-Reference service von Wein, Samuel P, Côté, Richard G, Dumousseau, Marine, Reisinger, Florian, Hermjakob, Henning, Vizcaíno, Juan A

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Published and Perished? The Influence of the Searched Protein Database on the Long-Term Storage of Proteomics Data von Griss, Johannes, Côté, Richard G., Gerner, Christopher, Hermjakob, Henning, Vizcaíno, Juan Antonio

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PRIDE: a public repository of protein and peptide identifications for the proteomics community von Jones, Philip, Côté, Richard G, Martens, Lennart, Quinn, Antony F, Taylor, Chris F, Derache, William, Hermjakob, Henning, Apweiler, Rolf

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The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries von Côté, Richard G, Jones, Philip, Apweiler, Rolf, Hermjakob, Henning

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jmzML, an open-source Java API for mzML, the PSI standard for MS data von Côté, Richard G, Reisinger, Florian, Martens, Lennart

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The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium von Côté, Richard G., Griss, Johannes, Dianes, José A., Wang, Rui, Wright, James C., van den Toorn, Henk W.P., van Breukelen, Bas, Heck, Albert J.R., Hulstaert, Niels, Martens, Lennart, Reisinger, Florian, Csordas, Attila, Ovelleiro, David, Perez-Rivevol, Yasset, Barsnes, Harald, Hermjakob, Henning, Vizcaíno, Juan Antonio

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PRIDE: new developments and new datasets von Jones, Philip, Côté, Richard G, Cho, Sang Yun, Klie, Sebastian, Martens, Lennart, Quinn, Antony F, Thorneycroft, David, Hermjakob, Henning

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Evaluation of PIQNIQ, a Novel Mobile Application for Capturing Dietary Intake von Blanchard, Caroline M, Chin, Meghan K, Gilhooly, Cheryl H, Barger, Kathryn, Matuszek, Gregory, Miki, Akari J, Côté, Richard G, Eldridge, Alison L, Green, Hilary, Mainardi, Fabio, Mehers, Damian, Ronga, Frédéric, Steullet, Vera, Das, Sai Krupa

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Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations von Ndegwa, Nelson, Côté, Richard G, Ovelleiro, David, D'Eustachio, Peter, Hermjakob, Henning, Vizcaíno, Juan A, Croft, David

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Ontology Lookup Service: more data and better tools for controlled vocabulary queries von Côté, Richard G, Jones, Philip, Martens, Lennart, Apweiler, Rolf, Hermjakob, Henning

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OLS dialog: an open-source front end to the ontology lookup service von Barsnes, Harald, Côté, Richard G, Eidhammer, Ingvar, Martens, Lennart

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OLS Dialog: An open-source front end to the Ontology Lookup Service von Barsnes, Harald, Côté, Richard G, Eidhammer, Ingvar, Martens, Lennart

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OLS Dialog : an open-source front end to the Ontology Lookup Service von Barsnes, Harald, Côté, Richard G, Eidhammer, Ingvar, Martens, Lennart

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The Ontology Lookup Service: bigger and better von Côté, Richard G, Reisinger, Florian, Martens, Lennart, Barsnes, Harald, Vizcaíno, Juan Antonio, Hermjakob, Henning

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The Proteomics Identifications database: 2010 update von Vizcaíno, Juan Antonio, Côté, Richard G, Reisinger, Florian, Barsnes, Harald, Foster, JM, Rameseder, Jonathan, Hermjakob, Henning, Martens, Lennart

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The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium von Côté, Richard G, Griss, Johannes, Dianes, José A, Wang, Rui, Wright, James C, van den Toorn, Henk W.P, van Breukelen, Bas, Heck, Albert J. R, Hulstaert, Niels, Martens, Lennart, Reisinger, Florian, Csordas, Attila, Ovelleiro, David, Perez-Rivevol, Yasset, Barsnes, Harald, Hermjakob, Henning, Vizcaíno, Juan Antonio

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